Podcasts Science

959 episodes

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Podcasts

A comprehensive analysis of the global human gut archaeome from a thousand genome catalogue

Published: Nov. 22, 2020, 11:02 a.m.
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Listed in: Science

Computational cell cycle analysis of single cell RNA-Seq data

Published: Nov. 22, 2020, 11:02 a.m.
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Frameshift and frame-preserving mutations in zebrafish presenilin 2 affect different cellular functions in young adult brains

Published: Nov. 22, 2020, 11:02 a.m.
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RepairSig: Deconvolution of DNA damage and repaircontributions to the mutational landscape of cancer

Published: Nov. 22, 2020, 9:01 a.m.
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A probabilistic model for indel evolution: differentiating insertions from deletions

Published: Nov. 22, 2020, 3:02 a.m.
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Inferring the spatial code of cell-cell interactions and communication across a whole animal body

Published: Nov. 22, 2020, 3:02 a.m.
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Genome Wide Association Studies on 7 Yield-relatedTraits of 183 Rice Varieties in Bangladesh

Published: Nov. 22, 2020, 3:02 a.m.
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Identification of cell-type marker genes from plant single-cell RNA-seq data using machine learning

Published: Nov. 22, 2020, 3:02 a.m.
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Clipper: p-value-free FDR control on high-throughput data from two conditions

Published: Nov. 21, 2020, 9:02 a.m.
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MetENPMetENPWeb: An R package and web application for metabolomics enrichment and pathway analysis in Metabolomics Workbench

Published: Nov. 21, 2020, 9:02 a.m.
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PCQC: Selecting optimal principal components for identifying clusters with highly imbalanced class sizes in single-cell RNA-seq data

Published: Nov. 20, 2020, 8:02 p.m.
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Alternating handedness motifs in proteins classify structure and cofactor binding

Published: Nov. 20, 2020, 3:03 p.m.
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dsSwissKnife: An R package for federated data analysis

Published: Nov. 20, 2020, 3:03 p.m.
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STATegra: Multi-omics data integration - A conceptual scheme with a bioinformatics pipeline

Published: Nov. 20, 2020, 8:02 a.m.
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DELocal: Chromosomal neighbourhoods having genes of diverse functions allow improved identification of differentially expressed genes

Published: Nov. 20, 2020, 8:01 a.m.
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Modeling the frequency and number of persons to test to detect and control COVID-19 outbreaks in congregate settings

Published: Nov. 20, 2020, 7:02 a.m.
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Bioinformatic Analysis Linking Genomic Defects to Chemosensitivity and Mechanism of Action

Published: Nov. 20, 2020, 7:02 a.m.
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2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Study

Published: Nov. 20, 2020, 4:03 a.m.
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TimeCycle: Topology Inspired MEthod for the Detection of Cycling Transcripts in Circadian Time-Series Data

Published: Nov. 20, 2020, 3:06 a.m.
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Arena3Dweb: Interactive 3D visualization of multilayered networks.

Published: Nov. 20, 2020, 3:06 a.m.
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scDesign2: an interpretable simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured

Published: Nov. 20, 2020, 3:06 a.m.
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Protein Cargo Assessment through Residue Alterations

Published: Nov. 20, 2020, 3:06 a.m.
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Deep Learning-based Ligand Design using Shared Latent Implicit Fingerprints from Collaborative Filtering

Published: Nov. 20, 2020, 3:06 a.m.
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piNET: An Automated Proliferation Index Calculator Framework for Ki67 Breast Cancer Images

Published: Nov. 20, 2020, 2:05 a.m.
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Multiple latent clusterisation model for the inference of RNA life-cycle kinetic rates from sequencing data

Published: Nov. 20, 2020, 2:05 a.m.
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Efficient and precise single-cell reference atlas mapping with Symphony

Published: Nov. 20, 2020, 2:05 a.m.
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Interactive design of GPU-accelerated Image Data Flow Graphs and cross-platform deployment using multi-lingual code generation

Published: Nov. 20, 2020, 2:05 a.m.
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A multi-modal machine learning approach towards predicting patient readmission

Published: Nov. 20, 2020, 2:04 a.m.
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SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes

Published: Nov. 20, 2020, 2:04 a.m.
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BOSO: a novel feature selection algorithm for linear regression with high-dimensional data

Published: Nov. 20, 2020, 2:04 a.m.
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Disentangling genetic feature selection and aggregation in transcriptome-wide association studies

Published: Nov. 20, 2020, 2:04 a.m.
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DrugOrchestra: Jointly predicting drug response, targets, and side effects via deep multi-task learning

Published: Nov. 20, 2020, 1:02 a.m.
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Meta-Prism 2.0: Enabling algorithm for ultra-fast, accurate and memory-efficient search among millions of microbial community samples

Published: Nov. 20, 2020, 1:02 a.m.
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scPretrain: Multi-task self-supervised learning for cell type classification

Published: Nov. 20, 2020, 1:02 a.m.
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cancerAlign: Stratifying tumors by unsupervised alignment across cancer types

Published: Nov. 20, 2020, 1:02 a.m.
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ABC-finder: A containerized web server for the identification and topology prediction of ABC proteins

Published: Nov. 19, 2020, 7:03 p.m.
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Human methylome variation across Infinium 450K data on the Gene Expression Omnibus

Published: Nov. 19, 2020, 3:03 a.m.
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Universal annotation of the human genome through integration of over a thousand epigenomic datasets

Published: Nov. 19, 2020, 3:03 a.m.
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Using Genome Graph Topology to Guide Annotation Matrix Sparsification

Published: Nov. 19, 2020, 3:02 a.m.
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The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the discovery, prediction, and exploration of mutational signatures

Published: Nov. 19, 2020, 3:02 a.m.
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High-dimensional association detection in large scale genomic data

Published: Nov. 18, 2020, 9:01 p.m.
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WEVar: a novel statistical learning framework for predicting noncoding regulatory variants

Published: Nov. 18, 2020, 8:02 p.m.
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PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data

Published: Nov. 18, 2020, 4:01 p.m.
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MegaGO: a fast yet powerful approach to assess functional similarity across meta-omics data sets

Published: Nov. 17, 2020, 6:03 p.m.
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Venice: A new algorithm for finding marker genes in single-cell transcriptomic data

Published: Nov. 17, 2020, 6:03 p.m.
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Design and implementation of an intelligent framework for supporting evidence-based treatment recommendations in precision oncology

Published: Nov. 17, 2020, 5:02 p.m.
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ToRQuEMaDA: Tool for Retrieving Queried Eubacteria, Metadata and Dereplicating Assemblies

Published: Nov. 17, 2020, 5:02 p.m.
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lra: the Long Read Aligner for Sequences and Contigs

Published: Nov. 17, 2020, 5:02 p.m.
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Multiscale PHATE Exploration of SARS-CoV-2 Data Reveals Multimodal Signatures of Disease

Published: Nov. 17, 2020, 5:02 p.m.
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Assessment of protein-protein interfaces in cryo-EM derived assemblies

Published: Nov. 17, 2020, 3:03 a.m.
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Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data

Published: Nov. 17, 2020, 2:03 a.m.
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Network based multifactorial modelling of miRNA-target interactions

Published: Nov. 17, 2020, 2:02 a.m.
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Celda: A Bayesian model to perform bi-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data

Published: Nov. 17, 2020, 1:02 a.m.
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Tysserand - Fast reconstruction of spatial networks from bioimages

Published: Nov. 17, 2020, 1:02 a.m.
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Simplified and unified access to cancer proteogenomic data

Published: Nov. 17, 2020, 1:02 a.m.
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Adding software to package management systems can increase their citation by 280%

Published: Nov. 17, 2020, 1:02 a.m.
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Distinct hydrogenotrophic bacteria are stimulated by elevated H2 levels in upland and wetland soils

Published: Nov. 16, 2020, 3:03 a.m.
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CAMP: a Convolutional Attention-based Neural Network for Multifaceted Peptide-protein Interaction Prediction

Published: Nov. 16, 2020, 3:03 a.m.
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Local Ancestry Prediction with PyLAE

Published: Nov. 16, 2020, 3:02 a.m.
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Fast Alignment-Free Similarity Estimation By Tensor Sketching

Published: Nov. 16, 2020, 3:02 a.m.
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COVATOR: A Software for Chimeric Coronavirus Identification

Published: Nov. 16, 2020, 2:04 a.m.
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SCNIC: Sparse Correlation Network Investigation for Compositional Data

Published: Nov. 16, 2020, 2:04 a.m.
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Trecode: a FAIR eco-system for the analysis and archiving of omics data in a combined diagnostic and research setting

Published: Nov. 16, 2020, 2:04 a.m.
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In silico analysis of single nucleotide polymorphisms (SNPs) in human C-C chemokine receptor type five (CCR5) gene

Published: Nov. 16, 2020, 2:04 a.m.
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Challenges in Benchmarking Metagenomic Profilers

Published: Nov. 16, 2020, 2:04 a.m.
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ISA API: An open platform for interoperable life science experimental metadata

Published: Nov. 16, 2020, 2:04 a.m.
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ABACUS: A flexible UMI counter that leverages intronic reads for single-nucleus RNAseq analysis

Published: Nov. 16, 2020, 2:04 a.m.
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Set-Min sketch: a probabilistic map for power-law distributions with application to k-mer annotation

Published: Nov. 16, 2020, 2:04 a.m.
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The Network Analysis Profiler (NAP v2.0): A web tool for visual topological comparison between multiple networks

Published: Nov. 16, 2020, 1:02 a.m.
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Proximity Measures as Graph Convolution Matrices for Link Prediction in Biological Networks

Published: Nov. 16, 2020, 1:02 a.m.
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Inherent population structure determines the importance of filtering parameters for reduced representation sequencing analyses

Published: Nov. 16, 2020, 1:02 a.m.
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Pancancer survival analysis of cancer hallmark genes

Published: Nov. 16, 2020, 1:02 a.m.
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precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

Published: Nov. 15, 2020, 8:02 p.m.
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Assessing Conservation of Alternative Splicing with Evolutionary Splicing Graphs

Published: Nov. 15, 2020, 8:02 p.m.
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Hybrid Clustering of single-cell gene-expression and cell spatial information via integrated NMF and k-means

Published: Nov. 15, 2020, 8:02 p.m.
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A zero inflated log-normal model for inference of sparse microbial association networks

Published: Nov. 15, 2020, 11:03 a.m.
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In silico investigation of Aedes aegypti male-determining factor (NIX): RNA recognition motif-3, structural model and selective nucleic acid binding mode.

Published: Nov. 15, 2020, 11:03 a.m.
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methylscaper: an RShiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data

Published: Nov. 15, 2020, 11:03 a.m.
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CRISPAltRations: a validated cloud-based approach for interrogation of double-strand break repair mediated by CRISPR genome editing

Published: Nov. 15, 2020, 7:01 a.m.
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Triplex and other DNA motifs show motif-specific associations with mitochondrial DNA deletions and species lifespan.

Published: Nov. 15, 2020, 5:04 a.m.
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MetamORF: A repository of unique short Open Reading Frames identified by both experimental and computational approaches for gene-level and meta-analysis

Published: Nov. 14, 2020, 12:01 p.m.
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Deep Semi-Supervised Learning Improves Universal Peptide Identification of Shotgun Proteomics Data

Published: Nov. 14, 2020, 9:01 a.m.
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A simplified workflow for the analysis of whole-genome sequencing data from Pristionchus pacificus mutant lines

Published: Nov. 13, 2020, 2:02 a.m.
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SeqPIP-2020: Sequence based Protein InteractionPrediction Contest

Published: Nov. 13, 2020, 2:02 a.m.
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ABLE: Attention Based Learning for Enzyme Classification

Published: Nov. 13, 2020, 1:02 a.m.
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Automatic wound detection and size estimation using deep learning algorithms

Published: Nov. 13, 2020, 1:02 a.m.
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DHS-Crystallize: Deep-Hybrid-Sequence based method for predicting protein Crystallization

Published: Nov. 13, 2020, 1:02 a.m.
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Bedshift: perturbation of genomic interval sets

Published: Nov. 12, 2020, 10:04 p.m.
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TIGA: Target illumination GWAS analytics

Published: Nov. 12, 2020, 10:04 p.m.
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A Markov Random Field Model for Network-based Differential Expression Analysis of Single-cell RNA-seq Data

Published: Nov. 12, 2020, 10:04 p.m.
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Frustration in protein complexes leads to interaction versatility

Published: Nov. 12, 2020, 10:04 p.m.
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Pangenome-based genome inference

Published: Nov. 12, 2020, 9:03 p.m.
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THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

Published: Nov. 12, 2020, 9:03 p.m.
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Plant derived bioactive compounds as potential inhibitors of ZIKA virus: an in silico investigation

Published: Nov. 12, 2020, 9:03 p.m.
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Tracing the evolution of aneuploid cancers from multiregional sequencing

Published: Nov. 12, 2020, 9:03 p.m.
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snpXplorer: a web application to explore SNP-associations and annotate SNP-sets

Published: Nov. 12, 2020, 7:01 p.m.
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A retrospective cluster analysis of COVID-19 cases by county

Published: Nov. 12, 2020, 7:01 a.m.
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Nucleotide-resolution bacterial pan-genomics with reference graphs

Published: Nov. 12, 2020, 3:01 a.m.
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Molecular Mimicry Map (3M) of SARS-CoV-2: Prediction of potentially immunopathogenic SARS-CoV-2 epitopes via a novel immunoinformatic approach

Published: Nov. 12, 2020, 2:01 a.m.
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Recovering genomes and phenotypes using allele-specific gene expression

Published: Nov. 12, 2020, 12:01 a.m.
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LongTron: Automated Analysis of Long Read Spliced Alignment Accuracy

Published: Nov. 11, 2020, 10:03 p.m.
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The SZS is an efficient statistical method to identify regulated splicing events in droplet-based RNA sequencing

Published: Nov. 11, 2020, 9:04 p.m.
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Precise Estimation of In Vivo Protein Turnover Rates

Published: Nov. 11, 2020, 9:04 p.m.
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FASTAFS: file system virtualisation of random access compressed FASTA files

Published: Nov. 11, 2020, 9:04 p.m.
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accuEnhancer: Accurate enhancer prediction by integration of multiple cell type data with deep learning

Published: Nov. 11, 2020, 9:04 p.m.
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Neural network fast-classifies biological images using features selected after their random-forests-importance to power smart microscopy.

Published: Nov. 11, 2020, 8:03 p.m.
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CoaTran: Coalescent tree simulation along a transmission network

Published: Nov. 11, 2020, 8:02 p.m.
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driveR: A Novel Method for Prioritizing Cancer Driver Genes Using Somatic Genomics Data

Published: Nov. 11, 2020, 8:02 p.m.
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TNMplot.com: a web tool for the comparison of gene expression in normal, tumor and metastatic tissues

Published: Nov. 11, 2020, 8:02 p.m.
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Phage Commander, a software tool for rapid annotation of bacteriophage genomes using multiple programs

Published: Nov. 11, 2020, 6:02 a.m.
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Network-based Virus-Host Interaction Prediction with Application to SARS-CoV-2

Published: Nov. 11, 2020, 4:01 a.m.
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In silico analyses on the comparative sensing of SARS-CoV-2 mRNA by intracellular TLRs of human

Published: Nov. 11, 2020, 3:02 a.m.
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Short-range template switching in great ape genomes explored using a pair hidden Markov model

Published: Nov. 10, 2020, 9:02 p.m.
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BABEL enables cross-modality translation between multi-omic profiles at single-cell resolution

Published: Nov. 10, 2020, 8:03 p.m.
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iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement

Published: Nov. 10, 2020, 8:03 p.m.
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DeepDrug: A general graph-based deep learning framework for drug relation prediction

Published: Nov. 10, 2020, 8:02 p.m.
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DeepCorn: A Semi-Supervised Deep Learning Method for High-Throughput Image-Based Corn Kernel Counting and Yield Estimation

Published: Nov. 10, 2020, 8:02 p.m.
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Exploring protein sequence and functional spaces using adversarial autoencoder

Published: Nov. 10, 2020, 8:02 p.m.
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ProteoMill: Efficient network-based functional analysis portal for proteomics data

Published: Nov. 10, 2020, 8:02 p.m.
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Retrieving high-resolution chromatin interactionsand decoding enhancer regulatory potential in silico

Published: Nov. 10, 2020, 6:03 p.m.
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Combined assessment of MHC binding and antigen expression improves T cell epitope predictions

Published: Nov. 10, 2020, 6:02 p.m.
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Inferring functionally relevant molecular tissue substructures by agglomerative clustering of digitized spatial transcriptomes

Published: Nov. 10, 2020, 6:02 p.m.
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censcyt: censored covariates in differential abundance analysis in cytometry

Published: Nov. 10, 2020, 5:02 p.m.
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Systematic comparative analysis of Mendelian randomization methods for inferring causal genes of complex phenotypes and the application to psychiatric diseases

Published: Nov. 10, 2020, 5:02 p.m.
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Target-Decoy MineR for determining the biological relevance of variables in noisy data sets

Published: Nov. 10, 2020, 5:02 p.m.
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DR2S: An Integrated Algorithm Providing Reference-Grade Haplotype Sequences from Heterozygous Samples

Published: Nov. 10, 2020, 4:03 p.m.
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An End-to-end Oxford Nanopore Basecaller Using Convolution-augmented Transformer

Published: Nov. 10, 2020, 4:03 p.m.
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PathDSP: Explainable Drug Sensitivity Prediction through Cancer Pathway Enrichment

Published: Nov. 10, 2020, 4:03 p.m.
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Predicting interchain contacts for homodimeric and homomultimeric protein complexes using multiple sequence alignments of monomers and deep learning

Published: Nov. 10, 2020, 4:02 p.m.
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KusakiDB v1.0: a novel approach for validation and completeness of protein orthologous groups

Published: Nov. 10, 2020, 4:02 p.m.
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Machine learning reveals sequence-function relationships in family 7 glycoside hydrolases

Published: Nov. 10, 2020, 3:02 p.m.
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NASA GeneLab RNA-Seq Consensus Pipeline: Standardized Processing of Short-Read RNA-Seq Data

Published: Nov. 10, 2020, 3:01 p.m.
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Coexpression reveals conserved mechanisms of transcriptional cell identity

Published: Nov. 10, 2020, 5:02 a.m.
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A Bayesian Nonparametric Model for Inferring Subclonal Populations from Structured DNA Sequencing Data

Published: Nov. 10, 2020, 1:01 a.m.
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Simulating trajectories and phylogenies from population dynamics models with TiPS

Published: Nov. 9, 2020, 11:03 p.m.
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cblaster: a remote search tool for rapid identification and visualisation of homologous gene clusters

Published: Nov. 9, 2020, 11:02 p.m.
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SPDE: A Multi-functional Software for Sequence Processing and Data Extraction

Published: Nov. 9, 2020, 11:02 p.m.
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SECANT: a biology-guided semi-supervised method for clustering, classification, and annotation of single-cell multi-omics

Published: Nov. 9, 2020, 4:02 p.m.
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Identifying Cross-Cancer Similar Patients via a Semi-Supervised Deep Clustering Approach

Published: Nov. 9, 2020, 12:02 a.m.
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clinker & clustermap.js: Automatic generation of gene cluster comparison figures

Published: Nov. 9, 2020, 12:02 a.m.
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Mechanistic analysis of enhancer sequences in the Estrogen Receptor transcriptional program

Published: Nov. 9, 2020, 12:02 a.m.
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Improving the efficiency of de Bruijn graph construction using compact universal hitting sets

Published: Nov. 8, 2020, 8:03 p.m.
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DeepCOMBI: Explainable artificial intelligence for the analysis and discovery in genome-wide association studies

Published: Nov. 8, 2020, 8:03 p.m.
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Identification of cell-type-specific marker genes from co-expression patterns in tissue samples

Published: Nov. 8, 2020, 7:03 p.m.
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Optimizing Consensus Generation Algorithms for Highly Variable Amino Acid Sequence Clusters

Published: Nov. 8, 2020, 7:03 p.m.
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EGAT: Edge Aggregated Graph Attention Networks and Transfer Learning Improve Protein-Protein Interaction Site Prediction

Published: Nov. 8, 2020, 7:03 p.m.
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CoBRA: Containerized Bioinformatics workflow for Reproducible ChIPATAC-seq Analysis - from differential peak calling to pathway analysis

Published: Nov. 8, 2020, 7:03 p.m.
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Variant pathogenic prediction by locus variability, the importance of the last picture of evolution.

Published: Nov. 8, 2020, 7:03 p.m.
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Pairtree: fast reconstruction of cancer evolutionary history using pairwise mutation relationships

Published: Nov. 8, 2020, 7:03 p.m.
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A deep learning framework with hybrid encoding for protein coding regions prediction in biological sequences

Published: Nov. 8, 2020, 7:03 p.m.
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Bioactivity assessment of natural compounds using machine learning models based on drug target similarity

Published: Nov. 8, 2020, 6:02 p.m.
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Nanopanel2 calls phased low-frequency variants in Nanopore panel sequencing data

Published: Nov. 8, 2020, 4:01 p.m.
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Xingnaojing injection can regulate dysbacteriosis and increase the concentration of short chain fatty acids in the feces after stroke in mice

Published: Nov. 8, 2020, 4:01 p.m.
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Variability of Accessory Proteins Rules the SARS-CoV-2 Pathogenicity

Published: Nov. 8, 2020, 11:02 a.m.
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Practical probabilistic and graphical formulations of long-read polyploid haplotype phasing

Published: Nov. 8, 2020, 4:04 a.m.
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Predicting drug resistance in M. tuberculosis using a Long-term Recurrent Convolutional Networks architecture

Published: Nov. 8, 2020, 4:04 a.m.
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Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

Published: Nov. 7, 2020, 10:01 a.m.
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Allosteric hotspots in the main protease of SARS-CoV-2

Published: Nov. 6, 2020, 9:01 p.m.
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Dimerization of the Mineralocorticoid Receptor LigandBinding Domain by helix 9, 10 and the F-domain

Published: Nov. 6, 2020, 2:01 p.m.
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emiRIT: A text-mining based resource for microRNA information

Published: Nov. 6, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

ExTaxsI: an exploration tool of biodiversity molecular data

Published: Nov. 6, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

High-Throughput Image-Based Plant Stand Count Estimation Using Convolutional Neural Networks

Published: Nov. 6, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data

Published: Nov. 5, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Multi-resolution characterization of molecular taxonomies in bulk and single-cell transcriptomics data

Published: Nov. 5, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Computational identification of splicing phenotypes from single cell transcriptomic experiments

Published: Nov. 5, 2020, 8:03 p.m.
Duration: N/A

Listed in: Science

Identifying temporal and spatial patterns of variation from multi-modal data using MEFISTO

Published: Nov. 5, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences

Published: Nov. 5, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

Estimating latent positions of actors using Neural Networks in R with GCN4R

Published: Nov. 5, 2020, 3:02 p.m.
Duration: N/A

Listed in: Science

Thermodynamic evaluation of the impact of DNA mismatches in PCR-type SARS-CoV-2 primers and probes

Published: Nov. 5, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

CRISPRIdentify: Identification of CRISPR arrays using machine learning approach

Published: Nov. 5, 2020, 5:02 a.m.
Duration: N/A

Listed in: Science

SwarmTCR: a computational approach to predict the specificity of T Cell Receptors

Published: Nov. 5, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Integrated Analysis of Cell Shape and Movement in Moving Frame

Published: Nov. 5, 2020, 1:04 a.m.
Duration: N/A

Listed in: Science

Identification of a novel fold type in CPAAT transporters by ab-initio structure prediction

Published: Nov. 5, 2020, 1:04 a.m.
Duration: N/A

Listed in: Science

BASE: a novel workflow to integrate non-ubiquitous genes in genomics analyses for selection.

Published: Nov. 5, 2020, 12:02 a.m.
Duration: N/A

Listed in: Science

IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis

Published: Nov. 5, 2020, 12:02 a.m.
Duration: N/A

Listed in: Science

DNAscent v2: Detecting Replication Forks in Nanopore Sequencing Data with Deep Learning

Published: Nov. 5, 2020, 12:02 a.m.
Duration: N/A

Listed in: Science

Information-theory-based benchmarking and feature selection algorithm improve cell type annotation and reproducibility of single cell RNA-seq data analysis pipelines

Published: Nov. 4, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

Label-free quantification with FDR-controlled match-between-runs

Published: Nov. 4, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Extensive and accurate benchmarking of DIA acquisition methods and software tools using a complex proteomic standard

Published: Nov. 4, 2020, 8:02 p.m.
Duration: N/A

Listed in: Science

Protein Structural Alignments From Sequence

Published: Nov. 4, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

Benchmarking Reverse-Complement Strategies for Deep Learning Models in Genomics

Published: Nov. 4, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

Variant Calling Parallelization on Processor-in-Memory Architecture

Published: Nov. 4, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Manifold alignment for heterogeneous single-cell multi-omics data integration using Pamona

Published: Nov. 4, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Strengthening the BioCompute Standard by Crowdsourcing on PrecisionFDA

Published: Nov. 4, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

Mantis: flexible and consensus-driven genome annotation

Published: Nov. 3, 2020, 8:02 p.m.
Duration: N/A

Listed in: Science

Immunopeptidomics for Dummies: Detailed Experimental Protocols and Rapid, User-Friendly Visualization of MHC I and II Ligand Datasets with MhcVizPipe

Published: Nov. 3, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

Runcer-Necromancer: A Method To Rescue Data From An Interrupted Run On MGISEQ-2000

Published: Nov. 3, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

RNA-Seq data analysis of a rodent model of adolescent binge drinking reveals pathways and candidate genes involved in neuronal remodeling and neuroimmune activation

Published: Nov. 3, 2020, 4:02 a.m.
Duration: N/A

Listed in: Science

Computational prediction of SARS-CoV-2 encoded miRNAs and their putative host targets

Published: Nov. 3, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

CoDNaS-RNA: a database of Conformational Diversity in the Native State of RNA

Published: Nov. 2, 2020, 1:02 p.m.
Duration: N/A

Listed in: Science

rawR - Direct access to raw mass spectrometry data in R

Published: Nov. 2, 2020, 1:01 p.m.
Duration: N/A

Listed in: Science

scCapsNet-mask: an automatic version of scCapsNet

Published: Nov. 2, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Do Support Vector Machines play a role in stratifying patient population based on cancer biomarkers?

Published: Nov. 2, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

A long read mapping method for highly repetitive reference sequences

Published: Nov. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Designing safe and potent herbicides with the cropCSM online resource

Published: Nov. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

TMExplorer: A Tumour Microenvironment Single-cell RNAseq Database and Search Tool

Published: Nov. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

MetaPop: A pipeline for macro- and micro-diversity analyses and visualization of microbial and viral metagenome-derived populations

Published: Nov. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Ontology-Aware Deep Learning Enables Ultrafast, Accurate and Interpretable Source Tracking among Sub-Million Microbial Community Samples from Hundreds of Niches

Published: Nov. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Temporal patterns in the evolutionary genetic distance of SARS-CoV-2 during the COVID-19 pandemic

Published: Nov. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

D614G substitution enhances the stability of trimeric SARS-CoV-2 spike protein

Published: Nov. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Genetic diversity analysis of the D614G mutation in SARS-CoV-2

Published: Nov. 2, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

IceR improves proteome coverage and data completeness in global and single-cell proteomics

Published: Nov. 2, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

OmicPioneer-sc: an integrated, interactive visualization environment for single-cell sequencing data

Published: Nov. 2, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

A model for pH coupling of the SARS-CoV-2 spike protein openclosed equilibrium.

Published: Nov. 1, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

An insight into SARS-CoV-2 Membrane protein interaction with Spike, Envelope, and Nucleocapsid proteins

Published: Nov. 1, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

Genome ARTIST_v2 software - a support for annotation of class II natural transposons in new sequenced genomes

Published: Nov. 1, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

Natural isotope correction improves analysis of protein modification dynamics

Published: Nov. 1, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

Discovering plasmids in metagenomes based on genetic architecture

Published: Nov. 1, 2020, 12:02 p.m.
Duration: N/A

Listed in: Science

First report of an insilico study of Luciferase in Mycobacterium sp. EPa45

Published: Nov. 1, 2020, 12:02 p.m.
Duration: N/A

Listed in: Science

Ethnicity-specific transcriptomic variation in immune cells and correlation with disease activity in systemic lupus erythematosus

Published: Nov. 1, 2020, 11:01 a.m.
Duration: N/A

Listed in: Science

A lightweight segmentation and lineage tracking tool for noisy, low frame rate 4D fluorescence microscopy data

Published: Nov. 1, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

UCSC Cell Browser: Visualize Your Single-Cell Data

Published: Oct. 31, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

A Network Medicine Approach to Drug Repurposing for Chronic Pancreatitis

Published: Oct. 31, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

Elucidating dynamics and regulation of alternative splicing in osteogenic differentiation

Published: Oct. 30, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

A Python-based optimization framework for high-performance genomics

Published: Oct. 30, 2020, 3:03 p.m.
Duration: N/A

Listed in: Science

SurfStamp: 3D Printer Compatible Molecular Surface Representation

Published: Oct. 30, 2020, 3:03 p.m.
Duration: N/A

Listed in: Science

Impact of germline and somatic cell cycle checkpoint kinase mutations on breast cancer presentation and prognosis.

Published: Oct. 30, 2020, 3:03 p.m.
Duration: N/A

Listed in: Science

Supervised Application of Internal Validation Measures to Benchmark Dimensionality Reduction Methods in scRNA-seq Data

Published: Oct. 30, 2020, 3:02 p.m.
Duration: N/A

Listed in: Science

Detecting significant components of microbiomes by random forest with forward variable selection and phylogenetics

Published: Oct. 30, 2020, 2:02 p.m.
Duration: N/A

Listed in: Science

BIO-LGCA: a cellular automaton modelling class for analysing collective cell migration

Published: Oct. 29, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

CuBlock: A cross-platform normalization method for gene-expression microarrays

Published: Oct. 29, 2020, 8:04 p.m.
Duration: N/A

Listed in: Science

Boosting the MS1-only proteomics with machine learning allows 2000 protein identifications in 5-minute proteome analysis

Published: Oct. 29, 2020, 8:04 p.m.
Duration: N/A

Listed in: Science

BC-store: a program for mgiseq barcode sets analysis

Published: Oct. 29, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

ViMIC: A Database of Human Disease-related Virus Mutations, Integration Sites and Cis-effects

Published: Oct. 29, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

Published: Oct. 29, 2020, 5:03 p.m.
Duration: N/A

Listed in: Science

Phylogenetic distribution of secondary metabolites in the Bacillus subtilis species complex

Published: Oct. 28, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

Species level resolution of female bladder microbiota from marker gene surveys

Published: Oct. 28, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

A multivariate method to correct for batch effects in microbiome data

Published: Oct. 28, 2020, 11:01 a.m.
Duration: N/A

Listed in: Science

simplifyEnrichment: an RBioconductor package for Clustering and Visualizing Functional Enrichment Results

Published: Oct. 28, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

Compression-based Network Interpretability Schemes

Published: Oct. 28, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

CharPlant: A De Novo Open Chromatin Region (OCR) Prediction Tool for Plant Genomes

Published: Oct. 28, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

HiCRep.py: Fast comparison of Hi-C contact matrices in Python

Published: Oct. 28, 2020, 9:02 a.m.
Duration: N/A

Listed in: Science

ASTER: A Method to Predict Clinically Actionable Synthetic Lethal Interactions

Published: Oct. 28, 2020, 9:02 a.m.
Duration: N/A

Listed in: Science

SplineDist: Automated Cell Segmentation with Spline Curves

Published: Oct. 28, 2020, 9:02 a.m.
Duration: N/A

Listed in: Science

A GO catalogue of human DNA-binding transcription factors

Published: Oct. 28, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

Evaluation of Methods for Protein Representation Learning: A Quantitative Analysis

Published: Oct. 28, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

A systematic analysis of the beta hairpin motif in the Protein Data Bank

Published: Oct. 28, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

SVIM-asm: Structural variant detection from haploid and diploid genome assemblies

Published: Oct. 27, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Shannon Entropy as a metric for conditional gene expression in Neurospora crassa

Published: Oct. 27, 2020, 8:03 p.m.
Duration: N/A

Listed in: Science

DOUBLER: Unified Representation Learning of Biological Entities and Documents for Predicting Protein-Disease Relationships

Published: Oct. 27, 2020, 8:03 p.m.
Duration: N/A

Listed in: Science

Applications of machine learning to solve genetics problems

Published: Oct. 27, 2020, 8:03 p.m.
Duration: N/A

Listed in: Science

BrainGENIE: The Brain Gene Expression and Network Imputation Engine

Published: Oct. 27, 2020, 8:03 p.m.
Duration: N/A

Listed in: Science

Large-Scale Labeling and Assessment of Sex Bias in Publicly Available Expression Data

Published: Oct. 27, 2020, 7:03 p.m.
Duration: N/A

Listed in: Science

Comprehensive and scalable quantification of splicing differences with MntJULiP

Published: Oct. 27, 2020, 7:03 p.m.
Duration: N/A

Listed in: Science

Interpreting the dynamic pathogenesis of Parkinson's disease by longitudinal blood transcriptome analysis

Published: Oct. 27, 2020, 7:03 p.m.
Duration: N/A

Listed in: Science

RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction

Published: Oct. 26, 2020, 10:02 p.m.
Duration: N/A

Listed in: Science

Symbiont-Screener: a reference-free filter to automatically separate host sequences and contaminants for long reads or co-barcoded reads by unsupervised clustering

Published: Oct. 26, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Transfer learning from simulations improves the classification of OCT images of glandular epithelia

Published: Oct. 26, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Systematic GWAS-assessment of disease modules reveals a multi-omic MS module strongly associated with risk factors

Published: Oct. 26, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

A Biological Inventory of Prophages in A. baumannii Genomes Reveal Distinct Distributions in Classes, Length and Genomic Positions

Published: Oct. 26, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Atomic-level evolutionary information improves protein-protein interface scoring

Published: Oct. 26, 2020, 8:03 p.m.
Duration: N/A

Listed in: Science

StartLink+: Prediction of Gene Starts in Prokaryotic Genomes by an Algorithm Integrating Independent Sources of Evidence

Published: Oct. 26, 2020, 8:03 p.m.
Duration: N/A

Listed in: Science

Ultra-fast Prediction of Somatic Structural Variations by Reduced Read Mapping via Pan-Genome k-mer Sets

Published: Oct. 26, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

ShinyCell: Simple and sharable visualisation of single-cell gene expression data

Published: Oct. 26, 2020, 11:01 a.m.
Duration: N/A

Listed in: Science

Tracking cytosine depletion in SARS-CoV-2

Published: Oct. 26, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

Neural networks to learn protein sequence-function relationships from deep mutational scanning data

Published: Oct. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Microbial community modelling and diversity estimation using the hierarchical Pitman-Yor process

Published: Oct. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

An Algorithmic framework for genome-wide identification of Sugarcane (Saccharum officinarum)-encoded microRNA Targets against SCBV

Published: Oct. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

nearBynding: A flexible pipeline characterizing protein binding to local RNA structure

Published: Oct. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Alleloscope: Integrative analysis of single cell haplotype-divergent copy number alterations and chromatin accessibility changes reveals novel clonal architecture of cancers

Published: Oct. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

High precision in microRNA prediction: a novel genome-wide approach based on convolutional deep residual networks

Published: Oct. 25, 2020, 12:02 p.m.
Duration: N/A

Listed in: Science

Comparative genomic analysis of Mycobacterium tuberculosis reveals evolution and genomic instability within Uganda I sub-lineage

Published: Oct. 25, 2020, 11:01 a.m.
Duration: N/A

Listed in: Science

Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data

Published: Oct. 23, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

Object-Attribute Biclustering for Elimination of Missing Genotypes in Ischemic Stroke Genome-Wide Data

Published: Oct. 23, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Benchmarking small variant detection with ONT reveals high performance in challenging regions

Published: Oct. 23, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Graph-based integration of histone modifications profiles: haematopoietic cell differentiation as a case study

Published: Oct. 23, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data

Published: Oct. 23, 2020, 4:02 p.m.
Duration: N/A

Listed in: Science

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

Published: Oct. 23, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

echolocatoR: an automated end-to-end statistical and functional genomic fine-mapping pipeline

Published: Oct. 23, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

Functional Microswitches of Mammalian G Protein-Coupled Bitter-Taste Receptors

Published: Oct. 23, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

Association Plots: Visualizing associations in high-dimensional correspondence analysis biplots

Published: Oct. 23, 2020, 12:04 a.m.
Duration: N/A

Listed in: Science

An extended reconstruction of human gut microbiota metabolism for personalized nutrition

Published: Oct. 23, 2020, 12:04 a.m.
Duration: N/A

Listed in: Science

Structural classification of proteins based on the computationally efficient recurrence quantification analysis and horizontal visibility graphs

Published: Oct. 23, 2020, 12:04 a.m.
Duration: N/A

Listed in: Science

Databiology Lab CORONAHACK: Collection of Public COVID-19 Data

Published: Oct. 22, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

Analysis of ovarian transcriptomes reveals thousands of novel genes in the insect vector Rhodnius prolixus

Published: Oct. 22, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

In silico secretome characterization of clinical Mycobacterium abscessus isolates provides insights into antigenic differences

Published: Oct. 22, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Cuttlefish: Fast, parallel, and low-memory compaction of de Bruijn graphs from large-scale genome collections

Published: Oct. 22, 2020, 4:03 a.m.
Duration: N/A

Listed in: Science

Ggtree: a serialized data object for visualization of phylogenetic tree and annotation data

Published: Oct. 22, 2020, 3:03 a.m.
Duration: N/A

Listed in: Science

SugarPy facilitates the universal, discovery-driven analysis of intact glycopeptides

Published: Oct. 22, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

TruSight Oncology 500: Enabling Comprehensive Genomic Profiling and Biomarker Reporting with Targeted Sequencing

Published: Oct. 22, 2020, 2:03 a.m.
Duration: N/A

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OmicLoupe: Facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons

Published: Oct. 22, 2020, 2:03 a.m.
Duration: N/A

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Single Individual Haplotype Reconstruction Using Fuzzy C-Means Clustering With Minimum Error Correction

Published: Oct. 22, 2020, 1:01 a.m.
Duration: N/A

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Widespread effects of DNA methylation and intra-motif dependencies revealed by novel transcript factor binding models

Published: Oct. 21, 2020, 9:01 p.m.
Duration: N/A

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Widespread occurrence of the droplet state of proteins in the human proteome

Published: Oct. 21, 2020, 9:01 p.m.
Duration: N/A

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A Stacked ensemble method for forecasting influenza-like illness visit volumes at emergency departments

Published: Oct. 21, 2020, 7:02 a.m.
Duration: N/A

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PharmaNet: Pharmaceutical discovery with deep recurrent neural networks.

Published: Oct. 21, 2020, 7:02 a.m.
Duration: N/A

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orfipy: a fast and flexible tool for extracting ORFs

Published: Oct. 21, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

From miRNA target gene network to miRNA function: miR-375 might regulate apoptosis and actin dynamics in the heart muscle via Rho-GTPases-dependent pathways

Published: Oct. 21, 2020, 3:04 a.m.
Duration: N/A

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TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes

Published: Oct. 21, 2020, 3:04 a.m.
Duration: N/A

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DSTG: Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence

Published: Oct. 21, 2020, 3:04 a.m.
Duration: N/A

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Multivariate Meta-Analysis of Differential Principal Components underlying Human Primed and Naive-like Pluripotent States

Published: Oct. 21, 2020, 3:04 a.m.
Duration: N/A

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Inferring spatially transient gene expression pattern from spatial transcriptomic studies

Published: Oct. 21, 2020, 2:05 a.m.
Duration: N/A

Listed in: Science

selfRL: Two-Level Self-Supervised Transformer Representation Learning for Link Prediction of Heterogeneous Biomedical Networks

Published: Oct. 21, 2020, 2:05 a.m.
Duration: N/A

Listed in: Science

HeartBioPortal2.0: new developments and updates for genetic ancestry and cardiometabolic quantitative traits in diverse human populations

Published: Oct. 21, 2020, 2:05 a.m.
Duration: N/A

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Improving power while controlling the false discovery rate when only a subset of peptides are relevant

Published: Oct. 21, 2020, 2:05 a.m.
Duration: N/A

Listed in: Science

Screening and potent applicability analysis of commonly used pesticides against desert locust: an integrative entomo-informatics approach

Published: Oct. 21, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

Tracking changes in behavioural dynamics using prediction error

Published: Oct. 21, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

CellRank for directed single-cell fate mapping

Published: Oct. 20, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Impact of clade specific mutations on structural fidelity of SARS-CoV-2 proteins

Published: Oct. 20, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs

Published: Oct. 19, 2020, 11:02 p.m.
Duration: N/A

Listed in: Science

Strain-level sample characterisation using long reads and MAPQ scores

Published: Oct. 19, 2020, 11:02 p.m.
Duration: N/A

Listed in: Science

Identification of potential inhibitory analogs of metastasis tumor antigens (MTAs) using bioactive compounds: revealing therapeutic option to prevent malignancy

Published: Oct. 19, 2020, 11:02 p.m.
Duration: N/A

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Phylogenetic placement of short reads without sequence alignment

Published: Oct. 19, 2020, 11:02 p.m.
Duration: N/A

Listed in: Science

Consensus clustering applied to multi-omic disease subtyping

Published: Oct. 19, 2020, 11:02 p.m.
Duration: N/A

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Individual-based simulations of genome evolution with ancestry: the GENOMEADMIXR R package

Published: Oct. 19, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

DNA methylation-based sex classifier to predict sex and identify sex chromosome aneuploidy

Published: Oct. 19, 2020, 4:01 a.m.
Duration: N/A

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Prioritization prostate cancer to immune checkpoint therapy by ranking tumors along IFN-γ axis and identification of immune resistance mechanisms

Published: Oct. 19, 2020, 4:01 a.m.
Duration: N/A

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SKiM - A generalized literature-based discovery system for uncovering novel biomedical knowledge from PubMed

Published: Oct. 17, 2020, 11:02 a.m.
Duration: N/A

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MGDrivE 2: A simulation framework for gene drive systems incorporating seasonality and epidemiological dynamics

Published: Oct. 17, 2020, 11:02 a.m.
Duration: N/A

Listed in: Science

Predicting Brain Amyloid Using Multivariate Morphometry Statistics, Sparse Coding, and Correntropy: Validation in 1,125 Individuals from the ADNI and OASIS Databases

Published: Oct. 17, 2020, 10:02 a.m.
Duration: N/A

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Cardiovascular Disease Related Proteomic Biomarkers of Alcohol Consumption

Published: Oct. 17, 2020, 7:02 a.m.
Duration: N/A

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Integrating multimeric threading with high-throughput experiments for structural interactome of Escherichia coli

Published: Oct. 17, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

CpelTdm.jl: a Julia package for targeted differential DNA methylation analysis

Published: Oct. 17, 2020, 6:02 a.m.
Duration: N/A

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Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps

Published: Oct. 16, 2020, 9:02 p.m.
Duration: N/A

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Leveraging Sequential and Spatial Neighbors Information by Using CNNs Linked With GCNs for Paratope Prediction

Published: Oct. 16, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

Predicting Cell-Penetrating Peptides: Building and Interpreting Random Forest based prediction Models

Published: Oct. 16, 2020, 6:02 p.m.
Duration: N/A

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Structural studies on M. tuberculosis decaprenyl phosphoryl-β-D-ribose epimerase-2 enzyme involved in cell wall biogenesis

Published: Oct. 16, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Improving the sensitivity of differential-expression analyses for under-powered RNA-seq experiments

Published: Oct. 16, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Latent Feature Representations for Human Gene Expression Data Improve Phenotypic Predictions

Published: Oct. 16, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

GIANI: open-source software for automated analysis of 3D microscopy images

Published: Oct. 16, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Single cell transcriptome sequencing on the Nanopore platform with ScNapBar

Published: Oct. 16, 2020, 4:02 a.m.
Duration: N/A

Listed in: Science

Easy identification of insertion sequence mobilization events in related bacterial strains with ISCompare.

Published: Oct. 16, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

Functional assessments of PTEN variants using machine-assisted phenotype scoring

Published: Oct. 16, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Systematic benchmarking of tools for CpG methylation detectionfrom Nanopore sequencing

Published: Oct. 15, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

Co-evolutionary Distance Prediction for Flexibility Prediction

Published: Oct. 15, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data

Published: Oct. 15, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

Aird: A computation-oriented mass spectrometry data format enables higher compression ratio and less decoding time

Published: Oct. 15, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

Connecting high-resolution 3D chromatin organization with epigenomics

Published: Oct. 14, 2020, 11:02 p.m.
Duration: N/A

Listed in: Science

DEBKS: A Tool to Detect Differentially Expressed Circular RNA

Published: Oct. 14, 2020, 10:02 p.m.
Duration: N/A

Listed in: Science

In-silico development of a method for the selection of optimal enzymes using L-asparaginase II against Acute Lymphoblastic Leukemia as an example.

Published: Oct. 14, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

DIMA: Data-driven selection of a suitable imputation algorithm

Published: Oct. 14, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Comparison between instrumental variable and mediation-based methods for reconstructing causal gene networks in yeast

Published: Oct. 14, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

SWOTein: A structure-based approach to predict stability Strengths and Weaknesses of prOTEINs

Published: Oct. 14, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

COVID19: Exploring uncommon epitopes for a stable immune response through MHC1 binding

Published: Oct. 14, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

MaveRegistry: a collaboration platform for multiplexed assays of variant effect

Published: Oct. 14, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies

Published: Oct. 14, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses

Published: Oct. 14, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry

Published: Oct. 13, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

SoftWipe - a tool and benchmark to assess scientific software quality

Published: Oct. 13, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Molecular characterization of SARS-CoV-2 from Bangladesh: Implications in genetic diversity, possible origin of the virus, and functional significance of the mutations

Published: Oct. 13, 2020, 4:02 a.m.
Duration: N/A

Listed in: Science

On the role of photoreceptor identity in controlling accurate wiring of the Drosophila visual circuit

Published: Oct. 13, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

fastISM: Performant in-silico saturation mutagenesis for convolutional neural networks

Published: Oct. 13, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

Heterogeneous Mediation Analysis for Causal Inference

Published: Oct. 13, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Compact and evenly distributed k-mer binning for genomic sequences

Published: Oct. 12, 2020, 1:01 p.m.
Duration: N/A

Listed in: Science

Improved protein structure prediction by deep learning irrespective of co-evolution information

Published: Oct. 12, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

Single cell transcriptome analysis defines novel heterogeneity within the pancreatic ductal tree

Published: Oct. 12, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

Differential gene expression in the interactome of the Human Dopamine transporter in the context of Parkinson's disease

Published: Oct. 12, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

mutSigMapper: an R package to map spectra to mutational signatures based on shot-noise modeling

Published: Oct. 12, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

Learning, Visualizing and Exploring 16S rRNA Structure Using an Attention-based Deep Neural Network

Published: Oct. 12, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency

Published: Oct. 12, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Determining subpopulation methylation profiles from bisulfite sequencing data of heterogeneous samples using DXM

Published: Oct. 12, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Mathematical formulation and application of kernel tensor decomposition based unsupervised feature extraction

Published: Oct. 12, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

3D reconstruction of genomic regions from sparse interaction data

Published: Oct. 11, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

HiC-DC+: systematic 3D interaction calls and differential analysis for Hi-C and HiChIP

Published: Oct. 11, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Genotype-free individual genome reconstruction of Multiparental Population Models by RNA sequencing data

Published: Oct. 11, 2020, 4:02 a.m.
Duration: N/A

Listed in: Science

Diversity and prevalence of ANTAR RNAs across actinobacteria

Published: Oct. 11, 2020, 4:02 a.m.
Duration: N/A

Listed in: Science

GlycoPathDB: A database of monosaccharide biosynthesis pathways

Published: Oct. 10, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

Mirage: A phylogenetic mixture model to reconstruct gene-content evolutionary history using a realistic evolutionary rate model

Published: Oct. 10, 2020, 11:02 a.m.
Duration: N/A

Listed in: Science

piRPheno: a manually curated database to prioritize and analyze human disease related piRNAs

Published: Oct. 10, 2020, 10:04 a.m.
Duration: N/A

Listed in: Science

Identification of key immune regulatory genes in HIV-1Progression

Published: Oct. 10, 2020, 10:04 a.m.
Duration: N/A

Listed in: Science

Gene-level metagenomics identifies genome islands associated with immunotherapy response

Published: Oct. 10, 2020, 10:03 a.m.
Duration: N/A

Listed in: Science

Expanding the Galaxy's reference data

Published: Oct. 10, 2020, 10:03 a.m.
Duration: N/A

Listed in: Science

HextractoR: an R package for automatic extraction of hairpins from genome-wide data

Published: Oct. 10, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Features of Functional Human Genes.

Published: Oct. 10, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

BAli-Phy version 3: Model-based co-estimation of Alignment and Phylogeny

Published: Oct. 10, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

sc-REnF: An entropy guided robust feature selection for clustering of single-cell rna-seq data

Published: Oct. 10, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Novel metric for hyperbolic phylogenetic tree embeddings

Published: Oct. 10, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data

Published: Oct. 9, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

idCOV: a pipeline for quick clade identification of SARS-CoV-2 isolates

Published: Oct. 9, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Time-dependent synergy for multi-agent anticancer therapy

Published: Oct. 9, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

A Machine Learning approach for assessing drug development risk

Published: Oct. 9, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Joint automatic metabolite identification and quantification of a set of 1H NMR spectra

Published: Oct. 9, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Automated quality control and cell identification of droplet-based single-cell data using dropkick

Published: Oct. 9, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

A deep learning framework for elucidating whole-genome chemical interaction space

Published: Oct. 9, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Possible transmission flow of SARS-CoV-2 based on ACE2 features

Published: Oct. 9, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

Fast-Bonito: A Faster Basecaller for Nanopore Sequencing

Published: Oct. 9, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

BugSeq: a highly accurate cloud platform for long-read metagenomic analyses

Published: Oct. 9, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Creating Clear and Informative Image-based Figures for Scientific Publications

Published: Oct. 8, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets

Published: Oct. 8, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

DeepFoci: Deep Learning-Based Algorithm for Fast Automatic Analysis of DNA Double Strand Break Ionizing Radiation-Induced Foci

Published: Oct. 8, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

BiSulfite Bolt: A BiSulfite Sequencing Analysis Platform

Published: Oct. 8, 2020, 4:03 p.m.
Duration: N/A

Listed in: Science

F-Seq2: improving the feature density based peak caller with dynamic statistics

Published: Oct. 8, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

Action detection using a neural network elucidates the genetics of mouse grooming behavior

Published: Oct. 8, 2020, 2:02 p.m.
Duration: N/A

Listed in: Science

DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data

Published: Oct. 8, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

Published: Oct. 8, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences

Published: Oct. 8, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Probabilistic method corrects previously uncharacterized Hi-C artifact

Published: Oct. 8, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

MAJORA: Continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

Published: Oct. 7, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Genome-scale reconstructions to assess metabolic phylogeny and organism clustering

Published: Oct. 7, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

SACSANN: identifying sequence-based determinants of chromosomal compartments

Published: Oct. 7, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction

Published: Oct. 7, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Fast and interpretable scRNA-seq data analysis

Published: Oct. 7, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

MultiPhATE2: Code for Functional Annotation and Comparison of Bacteriophage Genomes

Published: Oct. 7, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

JIND: Joint Integration and Discrimination for Automated Single-Cell Annotation

Published: Oct. 7, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks

Published: Oct. 7, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

H-tSNE: Hierarchical Nonlinear Dimensionality Reduction

Published: Oct. 7, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Bayesian segmentation of spatially resolved transcriptomics data

Published: Oct. 6, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

Motif Analysis in k-mer Networks: An Approach towards Understanding SARS-CoV-2 Geographical Shifts

Published: Oct. 5, 2020, 4:02 a.m.
Duration: N/A

Listed in: Science

Protlego: A Python package for the analysis and design of chimeric proteins

Published: Oct. 5, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

NAP-CNB: Bioinformatic pipeline to predict MHC-I-restricted T cell epitopes in mice

Published: Oct. 5, 2020, 1:03 a.m.
Duration: N/A

Listed in: Science

CancerMIRNome: a web server for interactive analysis and visualization of cancer miRNome data

Published: Oct. 5, 2020, 1:03 a.m.
Duration: N/A

Listed in: Science

RESCRIPt: Reproducible sequence taxonomy reference database management for the masses

Published: Oct. 5, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

New targets acquired: improving locus recovery from the Angiosperms353 probe set

Published: Oct. 5, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Deep Homology-Based Protein Contact-Map Prediction

Published: Oct. 5, 2020, 12:02 a.m.
Duration: N/A

Listed in: Science

Automatic Recognition of Auditory Brainstem Response Characteristic Waveform based on BiLSTM

Published: Oct. 5, 2020, 12:02 a.m.
Duration: N/A

Listed in: Science

Dynamic characteristics rather than static hubs are important in biological networks

Published: Oct. 4, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Projection in genomic analysis: A theoretical basis to rationalize tensor decomposition and principal component analysis as feature selection tools

Published: Oct. 4, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30

Published: Oct. 4, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

KMD clustering: Robust generic clustering of biological data

Published: Oct. 4, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Testcrosses are an efficient strategy for identifying cis regulatory variation: Bayesian analysis of allele specific expression (BASE)

Published: Oct. 3, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

A novel algorithm to accurately classify metagenomic sequences

Published: Oct. 3, 2020, 9:03 a.m.
Duration: N/A

Listed in: Science

MetaGraph: Indexing and Analysing Nucleotide Archives at Petabase-scale

Published: Oct. 2, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

A deep learning framework for characterization of genotype data

Published: Oct. 2, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

Leveraging High-Throughput Screening Data and Conditional Generative Adversarial Networks to Advance Predictive Toxicology

Published: Oct. 2, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

Discovering Key Transcriptomic Regulators in Pancreatic Ductal Adenocarcinoma using Dirichlet Process Gaussian Mixture Model

Published: Oct. 2, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

Inference of multiple trajectories in single cell RNA-seq data from RNA velocity

Published: Oct. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

ezGeno: An Automatic Model Selection Package for Genomic Data Analysis

Published: Oct. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Nabo - a framework to define leukemia-initiating cells and differentiation in single-cell RNA-sequencing data

Published: Oct. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Improved protein model quality assessment by integrating sequential and pairwise features using deep learning

Published: Oct. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

The DOE JGI Metagenome Workflow

Published: Oct. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Parallelized calculation of permutation tests

Published: Oct. 2, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

PyHDX: Derivation and visualization of protection factors from Hydrogen-Deuterium Exchange Mass Spectrometry at near residue resolution

Published: Oct. 2, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Nonlinear post-selection inference for genome-wide association studies

Published: Oct. 2, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

A chaotic viewpoint-based approach to solve haplotype assembly using hypergraph model

Published: Oct. 1, 2020, 11:02 p.m.
Duration: N/A

Listed in: Science

Syncmers are more sensitive than minimizers for selecting conserved k-mers in biological sequences

Published: Oct. 1, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

A Convolutional Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction

Published: Oct. 1, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

SC-JNMF: Single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorization

Published: Oct. 1, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Robust and independent metabolic transcriptional components in 34,494 patient-derived samples and cell lines: a resource for translational cancer research

Published: Oct. 1, 2020, 4:02 p.m.
Duration: N/A

Listed in: Science

Modeling multifunctionality of genes with secondary gene co-expression networks in human brain provides novel disease insights

Published: Oct. 1, 2020, 4:02 p.m.
Duration: N/A

Listed in: Science

I-CONVEX: Fast and Accurate de Novo Transcriptome Recovery from Long Reads

Published: Oct. 1, 2020, 4:02 p.m.
Duration: N/A

Listed in: Science

Boolean Implication Analysis Improves Prediction Accuracy of In Silico Gene Reporting of Retinal Cell Types

Published: Oct. 1, 2020, 3:02 p.m.
Duration: N/A

Listed in: Science

HiCORE: Hi-C analysis for identification of core chromatin loops with higher resolution and reliability

Published: Oct. 1, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

DamageProfiler: Fast damage pattern calculation for ancient DNA

Published: Oct. 1, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

A small interfering RNA (siRNA) database for SARS-CoV-2

Published: Oct. 1, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

ToxVec: Deep Language Model-Based Representation Learning for Venom Peptide Classification

Published: Oct. 1, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

A novel regulatory element upstream of TNFAIP3 promoter may be influenced by SLE risk variants

Published: Sept. 30, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

AutoCoEv: a high-throughput in silico pipeline for revealing novel protein-protein interactions

Published: Sept. 30, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

Computational identification of human biological processes and protein sequence motifs putatively targeted by SARS-CoV-2 proteins using protein-protein interaction networks

Published: Sept. 30, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Mapping single-cell atlases throughout Metazoa unravels cell type evolution

Published: Sept. 30, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Dincta: Data INtegration and Cell Type Annotation of Single Cell Transcriptomes

Published: Sept. 30, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

A cloud-based platform for the analysis of single cell RNA sequencing data.

Published: Sept. 29, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

A decoupled, modular and scriptable architecture for tools to curate data platforms

Published: Sept. 29, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

SeeCiTe: a method to assess CNV calls from SNP arrays using trio data

Published: Sept. 29, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

MonaGO: a novel Gene Ontology enrichment analysis visualisation system

Published: Sept. 29, 2020, 3:02 p.m.
Duration: N/A

Listed in: Science

A deep learning algorithm to translate and classify cardiac electrophysiology: From iPSC-CMs to adult cardiac cells

Published: Sept. 29, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Interpreting blood GLUcose data with R package iglu

Published: Sept. 29, 2020, 2:01 a.m.
Duration: N/A

Listed in: Science

Drug REpurposing using AIML tools - for Rare Diseases (DREAM-RD): A case study with Fragile X Syndrome (FXS)

Published: Sept. 28, 2020, 10:02 p.m.
Duration: N/A

Listed in: Science

ACP-MHCNN: An Accurate Multi-Headed Deep-Convolutional Neural Network to Predict Anticancer peptides

Published: Sept. 28, 2020, 10:02 p.m.
Duration: N/A

Listed in: Science

The Impact of Psychopathology, Social Adversity and Stress-relevant DNAm on Prospective Risk for Post-traumatic Stress: A Machine Learning Approach

Published: Sept. 28, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

TALE: Transformer-based protein function Annotation with joint sequence-Label Embedding

Published: Sept. 28, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Defining a Global Map of Functional Group Based 3D Ligand-binding Motifs

Published: Sept. 28, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Correspondence-aware manifold learning for microscopic and spatial omics imaging: a novel data fusion method bringing MSI to a cellular resolution.

Published: Sept. 28, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

DEELIG: A Deep Learning-based approach to predict protein-ligand binding affinity

Published: Sept. 28, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

3Cnet: Pathogenicity prediction of human variants using knowledge transfer with deep recurrent neural networks

Published: Sept. 28, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

Inductive Inference of Gene Regulatory Network Using Supervised and Semi-supervised Graph Neural Networks

Published: Sept. 28, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

Metagenomic Noncoding RNA Profiling and Biomarker Discovery

Published: Sept. 28, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

RaFAH: A superior method for virus-host prediction

Published: Sept. 27, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Detecting and phasing minor single-nucleotide variants from long-read sequencing data

Published: Sept. 27, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Individual variation in Achilles tendon morphology and geometry changes susceptibility to injury

Published: Sept. 27, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

NEBULA: a fast negative binomial mixed model for differential expression and co-expression analyses of large-scale multi subject single-cell data

Published: Sept. 25, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

A Tree of Human Gut Bacterial Species and its Applications to Metagenomics and Metaproteomics Data Analysis

Published: Sept. 25, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

A Joint Deep Learning Model for Simultaneous Batch Effect Correction, Denoising and Clustering in Single-Cell Transcriptomics

Published: Sept. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

NIAGADS Alzheimer's GenomicsDB: A resource for exploring Alzheimer's Disease genetic and genomic knowledge

Published: Sept. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

ADPriboDB v2.0: An Updated Database of ADP-ribosylated Proteins

Published: Sept. 25, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Extracting the phylogenetic dimension of coevolution reveals hidden functional signal

Published: Sept. 25, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Integrating identification and quantification uncertainty for differential protein abundance analysis with Triqler

Published: Sept. 25, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Evenness-richness scatter plots: a graphical, intuitive approach to alpha diversity analysis

Published: Sept. 25, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

CHARTS: A web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq datasets

Published: Sept. 25, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Spatially-Aware Clustering of Ion Images in Mass Spectrometry Imaging Data Using Deep Learning

Published: Sept. 25, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Computational design of genes encoding completely overlapping protein domains: Influence of genetic code and taxonomic rank

Published: Sept. 25, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Insights into the mechanism of bovine spermiogenesis based on comparative transcriptomic studies

Published: Sept. 25, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Revealing the Key Regulators of Cell Identity in the Human Adult Pancreas

Published: Sept. 25, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

Sequence Analysis for SNP Detection and Phylogenetic Reconstruction of SARS-CoV-2 Isolated from Nigerian COVID-19 Cases

Published: Sept. 25, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Evolution of ST-4821 clonal complex hyperinvasive and quinolone-resistant meningococci: the next meningococcal pandemic?

Published: Sept. 25, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

COVID-19 CG: Tracking SARS-CoV-2 mutations by locations and dates of interest

Published: Sept. 24, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Dynamic Analysis of Alternative Polyadenylation from Single-Cell RNA-Seq(scDaPars) Reveals Cell Subpopulations Invisible to Gene Expression Analysis

Published: Sept. 24, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing

Published: Sept. 24, 2020, 11:01 a.m.
Duration: N/A

Listed in: Science

scFEA: A graph neural network model to estimate cell-wise metabolic flux using single cell RNA-seq data

Published: Sept. 24, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Perfect representation of a convex 2D contour with only one Fourier component with application to discrimination analyses of marine species and stocks based on otolith contours

Published: Sept. 24, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Transcriptome analysis of resistant and susceptible pepper (Capsicum annuum L.) in response to Xanthomonas campestris pv. Vesicatoria

Published: Sept. 24, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

A vaccine built from potential immunogenic pieces derived from the SARS-CoV-2 spike glycoprotein

Published: Sept. 24, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Transcriptomic Analysis of Early Stages of Intestinal Regeneration in Holothuria glaberrima

Published: Sept. 24, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Natrix: A Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Published: Sept. 24, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

Unsupervised tensor decomposition-based method to extract candidate transcription factors as histone modification bookmarks in post-mitotic transcriptional reactivation

Published: Sept. 24, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

The COVID-19 PHARMACOME: Rational Selection of Drug Repurposing Candidates from Multimodal Knowledge Harmonization

Published: Sept. 23, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

SSMD: A semi-supervised approach for a robust cell type identification and deconvolution of mouse transcriptomics data

Published: Sept. 23, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

BigDataProcessor2: A free and open-source Fiji plugin for inspection and processing of TB sized image data

Published: Sept. 23, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

Comprehensive analysis of epigenetic signatures of human transcription control

Published: Sept. 23, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

An Advanced Framework for Time-lapse Microscopy Image Analysis

Published: Sept. 23, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

MarkerCapsule: Explainable Single Cell Typing using Capsule Networks

Published: Sept. 22, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

Mouse Single Pancreatic β Cell Transcriptomics Reveal Sexual Dimorphism of Transcriptomes and Identify Sex-dependent Type 2 Diabetes Altered Genes

Published: Sept. 22, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

HiCRes: a computational method to estimate and predict the resolution of HiC libraries

Published: Sept. 22, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

High-dose pyruvate treatment alters skeletal muscle differentiation and expression of inflammation-related genes

Published: Sept. 22, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Copy-scAT: An R package for detection of large-scale and focal copy number alterations in single-cell chromatin accessibility datasets

Published: Sept. 22, 2020, 5:02 a.m.
Duration: N/A

Listed in: Science

ANNAVP, using neural networks to predict neutralization efficiency of antibodies against viral strains and to cluster strains by protein sequence

Published: Sept. 22, 2020, 5:02 a.m.
Duration: N/A

Listed in: Science

Deep learning of gene interactions from single cell time-course expression data

Published: Sept. 22, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

AI-guided discovery of the invariant host response to viral pandemics

Published: Sept. 22, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Inferring intestinal mucosal immune cell associated microbiome species and microbiota-derived metabolites in inflammatory bowel disease

Published: Sept. 21, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Proficiency Testing for bacterial whole genome sequencing in assuring the quality of microbiology diagnostics in clinical and public health laboratories

Published: Sept. 21, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease

Published: Sept. 21, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

A Multi-center Cross-platform Single-cell RNA Sequencing Reference Dataset

Published: Sept. 21, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

MetaFusion: A high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidates.

Published: Sept. 20, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

MBG: Minimizer-based Sparse de Bruijn Graph Construction

Published: Sept. 20, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Corna - An Open Source Python Tool For Natural Abundance Correction In Isotope Tracer Experiments

Published: Sept. 20, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Evolutionary and Structural Constraints Influencing Apolipoprotein A-I Amyloid Behavior

Published: Sept. 20, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Multi-Objective Approach for Identifying Cancer Subnetwork Markers

Published: Sept. 20, 2020, 1:03 a.m.
Duration: N/A

Listed in: Science

On the Mathematics of RNA Velocity I: Theoretical Analysis

Published: Sept. 20, 2020, 1:03 a.m.
Duration: N/A

Listed in: Science

High-Quality Genomes of Nanopore Sequencing by Homologous Polishing

Published: Sept. 20, 2020, 12:04 a.m.
Duration: N/A

Listed in: Science

An Overview of the Application of Deep Learning in Short Read Sequence Classification

Published: Sept. 20, 2020, 12:04 a.m.
Duration: N/A

Listed in: Science

Integration of the Drug-Gene Interaction Database (DGIdb) with open crowdsource efforts

Published: Sept. 20, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

ORCESTRA: a platform for orchestrating and sharing high-throughput pharmacogenomic analyses

Published: Sept. 20, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Si-C: method to infer biologically valid super-resolution intact genome structure from single-cell Hi-C data

Published: Sept. 20, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Making WAVES in Breedbase: An Integrated Spectral Data Storage and Analysis Pipeline for Plant Breeding Programs

Published: Sept. 20, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

DeepPPPred: An Ensemble of BERT, CNN, and RNN for Classifying Co-mentions of Proteins and Phenotypes

Published: Sept. 20, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

A framework to efficiently smooth L1 penalties for linear regression

Published: Sept. 19, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants in whole-genome sequencing

Published: Sept. 19, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Published: Sept. 19, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Integrating scRNA-seq data of multiple donors increases cell-type identification accuracy

Published: Sept. 19, 2020, 5:02 a.m.
Duration: N/A

Listed in: Science

DeepInsight-FS: Selecting features for non-image data using convolutional neural network

Published: Sept. 19, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

Applying Machine Learning Technology in the Prediction of Crop Infestation with Cotton Leafworm in Greenhouse

Published: Sept. 19, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

MiMSI - a deep multiple instance learning framework improves microsatellite instability detection from tumor next-generation sequencing

Published: Sept. 18, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

RatsPub: a webservice aided by deep learning to mine PubMed for addiction-related genes

Published: Sept. 18, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

HGNChelper: Identification and correction of invalid gene symbols for human and mouse

Published: Sept. 18, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

Primary case inference in viral outbreaks through analysis of intra-host variant population

Published: Sept. 18, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Stoichiometric Modelling of String Chemistries

Published: Sept. 18, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

HieRFIT: Hierarchical Random Forest for Information Transfer

Published: Sept. 18, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Physcraper: A Python package for continual update of evolutionary estimates using the Open Tree of Life

Published: Sept. 17, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

Molecular and functional characterization of buffalo nasal epithelial odorant binding proteins and their structural insights by in-silico and biochemical approach

Published: Sept. 17, 2020, 12:01 p.m.
Duration: N/A

Listed in: Science

Geographic heterogeneity impacts drug resistance predictions in Mycobacterium tuberculosis

Published: Sept. 17, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Struct2Graph: A graph attention network for structure based predictions of protein-protein interactions

Published: Sept. 17, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Mutational signatures in countries affected by SARS-CoV-2: Implications in host-pathogen interactome

Published: Sept. 17, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Reconstruction Algorithms for DNA-Storage Systems

Published: Sept. 17, 2020, 2:03 a.m.
Duration: N/A

Listed in: Science

Varlock: privacy preserving storage and dissemination of sequenced genomic data

Published: Sept. 16, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

Structural Coordinates: A novel approach to predict protein backbone conformation

Published: Sept. 16, 2020, 10:03 a.m.
Duration: N/A

Listed in: Science

Network Modeling and Inference of Peroxisome Proliferator-Activated Receptor Pathway in High fat diet-linked Obesity

Published: Sept. 16, 2020, 10:03 a.m.
Duration: N/A

Listed in: Science

MOVICS: an R package for multi-omics integration and visualization in cancer subtyping

Published: Sept. 16, 2020, 10:03 a.m.
Duration: N/A

Listed in: Science

CIAlign - A highly customisable command line tool to clean, interpret and visualise multiple sequence alignments.

Published: Sept. 16, 2020, 10:03 a.m.
Duration: N/A

Listed in: Science

Convergent adaptation in mitochondria of phylogenetically distant birds: does it exist?

Published: Sept. 16, 2020, 10:03 a.m.
Duration: N/A

Listed in: Science

Multi-label pathway prediction based on active dataset subsampling

Published: Sept. 16, 2020, 10:03 a.m.
Duration: N/A

Listed in: Science

A rigorous method for integrating multiple heterogeneous databases in genetic studies

Published: Sept. 16, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

Neural interactions in developing rhythmogenic spinal networks: Insights from computational modeling

Published: Sept. 16, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors

Published: Sept. 16, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

SeqRepo: A system for managing local collections biological sequences

Published: Sept. 16, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

An expanded gene catalog of mouse gut metagenome

Published: Sept. 16, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Tracking strains predicts personal microbiomes and reveals recent adaptive evolution

Published: Sept. 15, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data

Published: Sept. 15, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

Sequence-specific model for predicting peptide collision cross-section values in proteomic ion mobility spectrometry

Published: Sept. 15, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

A Linear-Time Solution to the Labeled Robinson-Foulds Distance Problem

Published: Sept. 15, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Computationally Grafting An IgE Epitope Onto A Scaffold

Published: Sept. 15, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Fast and robust identity-by-descent inference with the templated positional Burrows-Wheeler transform

Published: Sept. 15, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

Transcription Factors STAT5A and SPI1 Reveals RHBDD2 as a Potential Biomarker in Sepsis and Septic Shock

Published: Sept. 15, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations

Published: Sept. 15, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

SARS-CoV-2 ribosomal frameshifting pseudoknot: Improved secondary structure prediction and detection of inter-viral structural similarity

Published: Sept. 15, 2020, 5:02 a.m.
Duration: N/A

Listed in: Science

Performance and efficiency of machine learning algorithms for analyzing rectangular biomedical data

Published: Sept. 14, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

scGCN: a Graph Convolutional Networks Algorithm for Knowledge Transfer in Single Cell Omics

Published: Sept. 14, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit

Published: Sept. 14, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

Accurate prediction of residue-residue contacts across homo-oligomeric protein interfaces through deep leaning

Published: Sept. 14, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

pDeep3: Towards More Accurate Spectrum Prediction with Fast Few-Shot Learning

Published: Sept. 14, 2020, 4:02 p.m.
Duration: N/A

Listed in: Science

Functional Enrichment Analysis of Deregulated Long Non-Coding RNAs in Cancer Based on their Genomic Neighbors

Published: Sept. 14, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

A Hybrid High-Resolution Anatomical MRI Atlas with Sub-parcellation of Cortical Gyri using Resting fMRI

Published: Sept. 13, 2020, 12:01 p.m.
Duration: N/A

Listed in: Science

ERWR: Predicting Efficacious Drug Combinations in Cancer Based on Random Walk with Restart

Published: Sept. 13, 2020, 12:01 p.m.
Duration: N/A

Listed in: Science

Evaluation Of The Quercetin Semisynthetic Derivatives Interaction With Breast Cancer Resistance Protein

Published: Sept. 13, 2020, 12:01 p.m.
Duration: N/A

Listed in: Science

nanoDoc: RNA modification detection using Nanopore raw reads with Deep One-Class Classification

Published: Sept. 13, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Real-time structural motif searching in proteins using an inverted index strategy

Published: Sept. 12, 2020, 11:01 a.m.
Duration: N/A

Listed in: Science

Effects of underlying gene-regulation network structure on prediction accuracy in high-dimensional regression

Published: Sept. 12, 2020, 11:01 a.m.
Duration: N/A

Listed in: Science

Rapid Development of Improved Data-dependent Acquisition Strategies.

Published: Sept. 12, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

NGPINT: A Next-generation protein-protein interaction software

Published: Sept. 12, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Transcriptional reprogramming during effectorflg22-triggered immune is independent of defense phytohormone signaling networks

Published: Sept. 11, 2020, 5:04 p.m.
Duration: N/A

Listed in: Science

R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types

Published: Sept. 11, 2020, 11:02 a.m.
Duration: N/A

Listed in: Science

FRC-QE: A robust and comparable 3D microscopy image quality metric for cleared organoids

Published: Sept. 11, 2020, 11:02 a.m.
Duration: N/A

Listed in: Science

DTFLOW: Inference and Visualization of Single-cell Pseudo-temporal Trajectories Using Diffusion Propagation

Published: Sept. 11, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Evolution of research in biomedical sciences - a network-based characterization based on PubMed

Published: Sept. 11, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Go Get Data (GGD): simple, reproducible access to scientific data

Published: Sept. 11, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Proteome-wide prediction of bacterial carbohydrate-binding proteins as a tool for understanding commensal and pathogen colonisation of the vaginal microbiome

Published: Sept. 11, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

In silico prediction of COVID-19 test efficiency with DinoKnot

Published: Sept. 11, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes

Published: Sept. 11, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

PanACoTA: A modular tool for massive microbial comparative genomics

Published: Sept. 11, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Identifying zoonotic origin of SARS-CoV-2 by modeling the binding affinity between Spike receptor-binding domain and host ACE2

Published: Sept. 11, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

COVID-19 Biomarkers in research: Extension of the OncoMX cancer biomarker data model to capture biomarker data from other diseases.

Published: Sept. 10, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network

Published: Sept. 10, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

Disease Network Delineates the Disease Progression Profile of Cardiovascular Diseases

Published: Sept. 10, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

LIQA: Long-read Isoform Quantification and Analysis

Published: Sept. 10, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

Polee: RNA-Seq analysis using approximate likelihood

Published: Sept. 10, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Epitope - based peptide vaccine against glycoprotein GPC precursor of Lujo virus using immunoinformatics approaches

Published: Sept. 10, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

To rarefy or not to rarefy: Enhancing microbial community analysis through next-generation sequencing

Published: Sept. 10, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

AA_stat enables extensive characterization of artefact and post-translational modifications in bottom-up proteomics

Published: Sept. 9, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

Published: Sept. 9, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

CancerSiamese: one-shot learning for primary and metastatic tumor classification

Published: Sept. 9, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Geospatial HIV-1 subtype C gp120 sequence diversity and its predicated impact on broadly neutralizing antibody sensitivity

Published: Sept. 9, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

MorphOT: Transport-based interpolation between EM maps with UCSF ChimeraX

Published: Sept. 9, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

Structural Genetics of circulating variants affecting the SARS CoV-2 Spike human ACE2 complex

Published: Sept. 9, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Diversity and Function of the Eastern Oyster (Crassostrea virginica) Microbiome

Published: Sept. 9, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types

Published: Sept. 9, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Universal Spectrum Explorer: A standalone (web-)application for cross-resource spectrum comparison

Published: Sept. 9, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

cytomapper: an RBioconductor package for visualisation of highly multiplexed imaging data

Published: Sept. 9, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Repeated Decision Stumping Distils Simple Rules from Single Cell Data

Published: Sept. 9, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

KuLGaP: A Selective Measure for Assessing Therapy Response in Patient-Derived Xenografts

Published: Sept. 9, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

LongGeneDB: a data hub for long genes

Published: Sept. 9, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

A comprehensive phylogenetic analysis of the serpin superfamily

Published: Sept. 9, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Tracking SARS-CoV-2 T cells with epitope T-cell receptor recognition models

Published: Sept. 9, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Protocols for rational design of protein solubility and aggregation properties using Aggrescan3D standalone

Published: Sept. 9, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Potential impact on coagulopathy of gene variants of coagulation related proteins that interact with SARS-CoV-2

Published: Sept. 9, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Relative matching using low coverage sequencing

Published: Sept. 9, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

Learning a genome-wide score of human-mouse conservation at the functional genomics level

Published: Sept. 9, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

Joint Microbial and Metabolomic Network Estimation with the Censored Gaussian Graphical Model

Published: Sept. 9, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network

Published: Sept. 8, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Geometricus Represents Protein Structures as Shape-mers Derived from Moment Invariants

Published: Sept. 8, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Balrog: A universal protein model for prokaryotic gene prediction

Published: Sept. 8, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.

Published: Sept. 8, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

BURST enables mathematically optimal short-read alignment for big data

Published: Sept. 8, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

A neural network-based framework to understand the Type 2 Diabetes (T2D)-related alteration of the human gut microbiome

Published: Sept. 8, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

ClinePlotR: Visualizing genomic clines and detecting outliers in R

Published: Sept. 8, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

Analysis of SARS-CoV-2 genomes from across Africa reveals potentially clinically relevant mutations.

Published: Sept. 8, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Discrimination of melanoma cell lines with Fourier Transform Infrared (FTIR) spectroscopy

Published: Sept. 7, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Bioinformatics evaluation of the homologues of Schistosoma mansoni biomarker proteins of bladder cancer in other Schistosoma species

Published: Sept. 7, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Metagenomics Strain Resolution on Assembly Graphs

Published: Sept. 7, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Genome assembly and transcriptome analysis provide insights into the anti-schistosome mechanism of Microtus fortis

Published: Sept. 6, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

MiREDiBase: a manually curated database of editing events in microRNAs

Published: Sept. 6, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Privacy-Preserving and Robust Watermarking on Sequential Genome Data using Belief Propagation and Local Differential Privacy

Published: Sept. 6, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Embeddings from deep learning transfer GO annotations beyond homology

Published: Sept. 6, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

DISSECT: DISentangle SharablE ConTent for Multimodal Integration and Crosswise-mapping

Published: Sept. 6, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Self-Supervised Contrastive Learning of Protein Representations By Mutual Information Maximization

Published: Sept. 6, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Notable sequence homology of the ORF10 protein introspects the architecture of SARS-COV-2

Published: Sept. 6, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

New insights into nCOVID-19 binding domain and its cellular receptors

Published: Sept. 6, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

3DFAACTS-SNP: Using regulatory T cell-specific epigenomics data to uncover candidate mechanisms of Type-1 Diabetes (T1D) risk

Published: Sept. 5, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

BayesSpace enables the robust characterization of spatial gene expression architecture in tissue sections at increased resolution

Published: Sept. 5, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Characterizing tissue composition through combined analysis of single-cell morphologies and transcriptional states

Published: Sept. 5, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Vapur: A Search Engine to Find Related Protein - Compound Pairs in COVID-19 Literature

Published: Sept. 5, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

preciseTAD: A machine learning framework for precise 3D domain boundary prediction at base-level resolution

Published: Sept. 4, 2020, 7:04 p.m.
Duration: N/A

Listed in: Science

SS-Detect: Development and Validation of a New Strategy for Source-Based Morphometry in Multi-Scanner Studies

Published: Sept. 4, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Combination of deep neural network with attention mechanism enhances the explainability of protein contact prediction

Published: Sept. 4, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

QSIPrep: An integrative platform for preprocessing and reconstructing diffusion MRI

Published: Sept. 4, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Multi-BIRW:a network-based algorithm for drug repurposing

Published: Sept. 4, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

starmapVR: immersive visualisation of single cell spatial omic data

Published: Sept. 4, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

In silico candidate variant and gene identification using inbred mouse strains

Published: Sept. 4, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Detecting High Scoring Local Alignments in Pangenome Graphs

Published: Sept. 3, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

Published: Sept. 3, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

MetaFunc: Taxonomic and Functional Analyses of High Throughput Sequencing for Microbiomes

Published: Sept. 3, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

Training a neural network to learn other dimensionality reduction removes data size restrictions in bioinformatics and provides a new route to exploring data representations

Published: Sept. 3, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

Accurately Clustering Single-cell RNA-seq data by Capturing Structural Relations between Cells through Graph Convolutional Network

Published: Sept. 3, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

Comparative analysis of human brain organoids of brainstem and midbrain at single-cell resolution

Published: Sept. 3, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

Simulating the outcome of amyloid treatments in Alzheimer's Disease from multi-modal imaging and clinical data

Published: Sept. 3, 2020, 5:02 p.m.
Duration: N/A

Listed in: Science

Antibody Upstream Sequences Diversity and Its Biological Implications Revealed by Repertoire Sequencing

Published: Sept. 3, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Accurate spliced alignment of long RNAsequencing reads

Published: Sept. 3, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Graphia: A platform for the graph-based visualisation and analysis of complex data

Published: Sept. 3, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

comboFM: leveraging multi-way interactions for systematic prediction of drug combination effects

Published: Sept. 3, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Detection of native and mirror protein structures based on Ramachandran plot analysis by interpretable machine learning models

Published: Sept. 3, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Combining Natural Language Processing and Metabarcoding to Reveal Pathogen-Environment Associations

Published: Sept. 3, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Boosting the analysis of protein interfaces with Multiple Interface String Alignment: illustration on the spikes of coronaviruses

Published: Sept. 3, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

A Look-ahead Monte Carlo Simulation Method for Improving Parental Selection in Trait Introgression

Published: Sept. 2, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

Automated Deep Learning-based Multi-class Fluid Segmentation in Swept-Source Optical Coherence Tomography Images

Published: Sept. 2, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

In Silico Analysis of Effect of non-synonymous SNPs associated with Permanent Neonatal Diabetes Mellitus on Stability and Structure of Human Insulin

Published: Sept. 2, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Statistical Integration of Multiple Omics Datasets Using GO2PLS

Published: Sept. 1, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

Tissue specificity-aware TWAS (TSA-TWAS) framework identifies novel associations with metabolic, immunologic, and virologic traits in HIV-positive adults

Published: Sept. 1, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

An improved mode of running PASTA

Published: Sept. 1, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

iBRAB: in silico based-designed Broad-spectrum Fab against H1N1 Influenza A Virus

Published: Sept. 1, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

Identification of novel differentially expressed zooxanthellal genes from Aiptasia-Symbiodinium endosymbiosis through SDS-based RNA purification

Published: Sept. 1, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

Optimising biomedical relationship extraction with BioBERT: Best practices for data creation

Published: Sept. 1, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

High Throughput Computational Mouse Genetic Analysis

Published: Sept. 1, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Tree-Aggregated Predictive Modeling of Microbiome Data

Published: Sept. 1, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

THE MODEL OF PPARγ DOWNREGULATED SIGNALING IN PSORIASIS

Published: Sept. 1, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

VeTra: a new trajectory inference tool based on RNA velocity

Published: Sept. 1, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Regression plane concept: analysing continuous cellular processes with machine learning

Published: Sept. 1, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

PyClone-VI: Scalable inference of clonal population structures using whole genome data

Published: Sept. 1, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

dagLogo: an RBioconductor package for identifying and visualizing differential amino acid group usage in proteomics data

Published: Aug. 31, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

CyAnno: A semi-automated approach for cell type annotation of mass cytometry datasets

Published: Aug. 31, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

cellxgene VIP unleashes full power of interactive visualization, plotting and analysis of scRNA-seq data in the scale of millions of cells

Published: Aug. 31, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

gEAR: gene Expression Analysis Resource portal for community-driven, multi-omic data exploration

Published: Aug. 31, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

metabaR : an R package for the evaluation and improvement of DNA metabarcoding data quality

Published: Aug. 31, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

Identification of Dysregulated Pathways and key genes in Human Retinal Angiogenesis using Microarray Metadata

Published: Aug. 31, 2020, 1:03 a.m.
Duration: N/A

Listed in: Science

scMontage: Fast and Robust Gene Expression Similarity Search for Massive Single-cell Data

Published: Aug. 31, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

ASHIC: Hierarchical Bayesian modeling of diploid chromatin contacts and structures

Published: Aug. 31, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Discriminating the Single-cell Gene Regulatory Networks of Human Pancreatic Islets: A Novel Deep Learning Application

Published: Aug. 31, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

DiffGR: Detecting differentially interacting genomic regions from Hi-C contact maps

Published: Aug. 31, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Automatic de novo atomic-accuracy structure determination for cryo-EM maps using deep learning

Published: Aug. 30, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

Learning distance-dependent motif interactions: an interpretable CNN model of genomic events

Published: Aug. 29, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis

Published: Aug. 28, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Hyperbolic geometry of gene expression

Published: Aug. 28, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

Ribonucleotide incorporation characteristics around yeast autonomously replicating sequences reveal the labor division of replicative DNA polymerases

Published: Aug. 28, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

A Transferable Deep Learning Approach to Fast Screen Potent Antiviral Drugs against SARS-CoV-2

Published: Aug. 28, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Predicting the Health Impact of Dietary Polyphenols Using a Network Medicine Framework

Published: Aug. 28, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Mapping ribonucleotides embedded in genomic DNA to single-nucleotide resolution using Ribose-Map

Published: Aug. 27, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

KRSA: Network-based Prediction of Differential Kinase Activity from Kinome Array Data

Published: Aug. 27, 2020, 8:02 p.m.
Duration: N/A

Listed in: Science

Generating Property-Matched Decoy Molecules Using Deep Learning

Published: Aug. 27, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

Integrated Collection of Stem Cell Bank data, a data portal for standardized stem cell information

Published: Aug. 27, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

Designing of Epitope-Based Vaccine from the Conserved Region of the Spike Glycoprotein of SARS-CoV-2

Published: Aug. 27, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Genome-wide haplotype association study in imaging genetics using whole-brain sulcal openings of 16,304 UK Biobank subjects.

Published: Aug. 26, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data

Published: Aug. 26, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Molecular dynamics reveals complex compensatory effects of ionic strength on the SARS-CoV-2 SpikehACE-2 interaction

Published: Aug. 26, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

AI aided design of epitope-based vaccine for the induction of cellular immune responses against SARS-CoV-2

Published: Aug. 26, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

eQTpLot: an R package for the visualization and colocalization of eQTL and GWAS signals

Published: Aug. 26, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

PieParty: Visualizing cells from scRNA-seq data as pie charts

Published: Aug. 26, 2020, 2:01 a.m.
Duration: N/A

Listed in: Science

Using Multilayer Heterogeneous Networks to Infer Functions of Phosphorylated Sites

Published: Aug. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Multiscale virtual screening optimization for shotgun drug repurposing using the CANDO platform

Published: Aug. 25, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Single-cell mapper (scMappR): using scRNA-seq to infer cell-type specificities of differentially expressed genes

Published: Aug. 25, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Gene set enrichment analysis for genome-wide DNA methylation data

Published: Aug. 25, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Learning epistatic gene interactions from perturbation screens

Published: Aug. 25, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Predicting drug sensitivity of cancer cells based on DNA methylation levels

Published: Aug. 25, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

PFRED: A computational platform for siRNA and antisense oligonucleotides design.

Published: Aug. 25, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Unique mutational changes in SARS-CoV2 genome of different state of India

Published: Aug. 25, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

SARS-CoV-2 3CLpro Whole Human Proteome Cleavage Prediction and EnrichmentDepletion Analysis

Published: Aug. 25, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

A Novel Encoding Algorithm for Textual Data Compression

Published: Aug. 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

StackPDB: predicting DNA-binding proteins based on XGB-RFE feature optimization and stacked ensemble classifier

Published: Aug. 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Fertility-LightGBM: A fertility-related protein prediction model by multi-information fusion and light gradient boosting machine

Published: Aug. 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

Published: Aug. 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Study of In silico Anti-Inflammatory Potential of Tyramine-Fe complex in Brotowali Plants

Published: Aug. 24, 2020, 8:02 p.m.
Duration: N/A

Listed in: Science

EmpiReS: Differential Analysis of Gene Expression and Alternative Splicing

Published: Aug. 24, 2020, 8:02 p.m.
Duration: N/A

Listed in: Science

Intra-exon motif correlations as a proxy measure for mean per-tile sequence quality data in RNA-Seq

Published: Aug. 24, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

geneRFinder: gene finding in distinct metagenomic data complexities

Published: Aug. 24, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

Graph of graphs analysis for multiplexed data with application to imaging mass cytometry

Published: Aug. 24, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

UVC: universality-based calling of small variants using pseudo-neural networks

Published: Aug. 24, 2020, 7:02 p.m.
Duration: N/A

Listed in: Science

Predicting gene regulatory networks from cell atlases

Published: Aug. 24, 2020, 6:03 p.m.
Duration: N/A

Listed in: Science

MQF and buffered MQF: Quotient filters for efficient storage of k-mers with their counts and metadata

Published: Aug. 24, 2020, 6:03 p.m.
Duration: N/A

Listed in: Science

reMap: Relabeling Multi-label Pathway Data with Bags to Enhance Predictive Performance

Published: Aug. 24, 2020, 6:03 p.m.
Duration: N/A

Listed in: Science

MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction

Published: Aug. 24, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Detection of Discordant Peptide Quantities in Shotgun Proteomics Data by Peptide Correlation Analysis (PeCorA)

Published: Aug. 24, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

FinaleDB: a browser and database of cell-free DNA fragmentation patterns

Published: Aug. 24, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

dbGuide: A database of functionally validated guide RNAs for genome editing in human and mouse cells

Published: Aug. 24, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Gene families with stochastic exclusive gene choice underlie cell adhesion in mammalian cells

Published: Aug. 24, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Effect of synchronization of firings of different motor unit types on the force variability in a model of the rat medial gastrocnemius muscle

Published: Aug. 24, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

Embedding covariate adjustments in tree-based automated machine learning for biomedical big data analyses

Published: Aug. 24, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

A negative feedback model to explain regulation of SARS-CoV-2 replication and transcription

Published: Aug. 24, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Training Infrastructure as a Service

Published: Aug. 24, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Identifying Taxonomic Units in Metagenomic DNA Streams

Published: Aug. 23, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Automated analysis of rabbit knee calcified cartilage morphology using micro-computed tomography and deep learning segmentation

Published: Aug. 22, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

Generating hard-to-obtain information from easy-to-obtain information: applications in drug discovery and clinical inference

Published: Aug. 22, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

CLEP: A Hybrid Data- and Knowledge- Driven Framework for Generating Patient Representations

Published: Aug. 22, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Functional and druggability analysis of the SARS-CoV-2 proteome

Published: Aug. 22, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Temporal landscape of mutation accumulation in SARS-CoV-2 genomes from Bangladesh: possible implications from the ongoing outbreak in Bangladesh

Published: Aug. 21, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Covidex: an ultrafast and accurate tool for virus subtyping

Published: Aug. 21, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Unraveling the molecular basis of host cell receptor usage in SARS-CoV-2 and other human pathogenic β-CoVs

Published: Aug. 21, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Exploring G and C-quadruplex structures as potential targets against the severe acute respiratory syndrome coronavirus 2

Published: Aug. 20, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

SuperStructure: a Parameter-Free Super-Structure Identifier for SMLM Data

Published: Aug. 20, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

Accurate identification and quantification of commensal microbiota bound by host immunoglobulins

Published: Aug. 20, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

BART3D: Inferring transcriptional regulators associated with differential chromatin interactions from Hi-C data

Published: Aug. 20, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana

Published: Aug. 20, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Inferring protein sequence-function relationships with large-scale positive-unlabeled learning

Published: Aug. 20, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

nanotatoR: A tool for enhanced annotation of genomic structural variants

Published: Aug. 20, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

What if we perceive SARS-CoV-2 genomes as documents? Topic modelling using Latent Dirichlet Allocation to identify mutation signatures and classify SARS-CoV-2 genomes

Published: Aug. 20, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

An automated framework for efficiently designing deep convolutional neural networks in genomics

Published: Aug. 19, 2020, 8:03 p.m.
Duration: N/A

Listed in: Science

Role of selective Bioactive Compounds as an Angiotensin Converting Enzyme Inhibitor

Published: Aug. 19, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

Identification of potential key genes for SARS-CoV-2 infected human bronchial organoids based on bioinformatics analysis

Published: Aug. 19, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

SARS-CoV-2 ORF9c Is a Membrane-Associated Protein that Suppresses Antiviral Responses in Cells

Published: Aug. 19, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Reboot: a straightforward approach to identify genes and splicing isoforms associated with cancer patient prognosis

Published: Aug. 18, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters

Published: Aug. 18, 2020, 7:01 p.m.
Duration: N/A

Listed in: Science

Simultaneous deep generative modeling and clustering of single cell genomic data

Published: Aug. 18, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

UFold: Fast and Accurate RNA Secondary Structure Prediction with Deep Learning

Published: Aug. 18, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

Controlling for effects of confounding variables on machine learning predictions

Published: Aug. 18, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

Unveiling sex-based differences in the effects of alcohol abuse: a comprehensive functional meta-analysis of transcriptomic studies

Published: Aug. 18, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

Graph-regularized matrix factorization for reliable detection of topological units from high-throughput chromosome conformation capture datasets

Published: Aug. 18, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

Generalized linear models provide a measure of virulence for specific mutations in SARS-CoV-2 strains

Published: Aug. 18, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Spike protein mutational landscape in India: Could Mullers ratchet be a future game-changer for COVID-19?

Published: Aug. 18, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

Published: Aug. 18, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Impacts of Crenarchaeota and Halobacterota on sulfate reduction in the subtropical mangrove ecosystem as revealed by SMDB analysis

Published: Aug. 17, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

MultiGWAS: An integrative tool for Genome Wide Association Studies (GWAS) in tetraploid organisms

Published: Aug. 17, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

The risks of using the chi-square periodogram to estimate the period of biological rhythms

Published: Aug. 15, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment

Published: Aug. 15, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

nMAGMA: a network enhanced method for inferring risk genes from GWAS summary statistics and its application to schizophrenia

Published: Aug. 15, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Protocol for clustering of non-unified protein sequences through memory-map guided deep learning

Published: Aug. 15, 2020, 2:01 a.m.
Duration: N/A

Listed in: Science

msiPL: Non-linear Manifold and Peak Learning of Mass Spectrometry Imaging Data Using Artificial Neural Networks

Published: Aug. 14, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Bisbee: A proteomics validated analysis package for detecting differential splicing, identifying splice outliers, and predicting splice event protein effects

Published: Aug. 14, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

D-graph clusters flaviviruses and β-coronaviruses according to their hosts, disease type and human cell receptors

Published: Aug. 14, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

Profiling variable-number tandem repeat variation across populations using repeat-pangenome graphs

Published: Aug. 14, 2020, 5:01 p.m.
Duration: N/A

Listed in: Science

glmGamPoi: Fitting Gamma-Poisson Generalized Linear Models on Single Cell Count Data

Published: Aug. 14, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

Effective variant filtering and expected candidate variant yield in studies of rare human disease

Published: Aug. 14, 2020, 4:01 p.m.
Duration: N/A

Listed in: Science

circHiC: circular visualization of Hi-C data and integration of genomic data

Published: Aug. 14, 2020, 3:01 p.m.
Duration: N/A

Listed in: Science

simATAC: A Single-cell ATAC-seq Simulation Framework

Published: Aug. 14, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Metaviromic identification of genetic hotspots of coronavirus pathogenicity using machine learning

Published: Aug. 14, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

CRISPR-Decryptr reveals cis-regulatory elements from noncoding perturbation screens

Published: Aug. 14, 2020, 9 a.m.
Duration: N/A

Listed in: Science

WgLink: reconstructing whole-genome viral haplotypes using L0+L1-regularization

Published: Aug. 14, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

MRLocus: identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity

Published: Aug. 14, 2020, 2:01 a.m.
Duration: N/A

Listed in: Science

In Silico Design of siRNAs Targeting Existing and Future Respiratory Viruses with VirusSi

Published: Aug. 14, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering

Published: Aug. 14, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Investigation of Capsule-Inspired Neural Network Approaches for DNA Methylation

Published: Aug. 14, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

DeepKhib: a deep-learning framework for lysine 2-hydroxyisobutyrylation sites prediction

Published: Aug. 14, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

DeCompress: tissue compartment deconvolution of targeted mRNA expression panels using compressed sensing

Published: Aug. 14, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

SEMplMe: A tool for integrating DNA methylation effects in transcription factor binding affinity predictions

Published: Aug. 14, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

RNA Editing Signatures Predict Response to Immunotherapies in Melanoma Patients

Published: Aug. 13, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

Integrative Spatial Single-cell Analysis with Graph-based Feature Learning

Published: Aug. 13, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

A Novel Machine Learning Strategy for Prediction of Antihypertensive Peptides Derived from Food with High Efficiency

Published: Aug. 13, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

Shedding light on the underlying characteristics of genomes using Kronecker model families of codon evolution

Published: Aug. 13, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

DeepCSO: a deep-learning network approach to predicting Cysteine S-sulphenylation sites

Published: Aug. 13, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

DeepPSC (protein structure camera): computer vision-based reconstruction of proteins backbone structure from alpha carbon trace as a case study

Published: Aug. 13, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Phylogenetic correlations have limited effect on coevolution-based contact prediction in proteins

Published: Aug. 13, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Significantly improving the quality of genome assemblies through curation

Published: Aug. 13, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

MACMIC Reveals Dual Role of CTCF in Epigenetic Regulation of Cell Identity Genes

Published: Aug. 13, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

MSImpute: Imputation of label-free mass spectrometry peptides by low-rank approximation

Published: Aug. 13, 2020, 9 a.m.
Duration: N/A

Listed in: Science

Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation load

Published: Aug. 13, 2020, midnight
Duration: N/A

Listed in: Science

Evidence of interaction between humoral immunity and drug half-life in determining treatment outcome for artemisinin combination therapy in high transmission settings in western Kenya

Published: Aug. 12, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

MultiPaths: a Python framework for analyzing multi-layer biological networks using diffusion algorithms

Published: Aug. 12, 2020, 3:02 a.m.
Duration: N/A

Listed in: Science

Critical Assessment of Protein Intrinsic Disorder Prediction

Published: Aug. 12, 2020, 2:05 a.m.
Duration: N/A

Listed in: Science

Puffaligner: An Efficient and Accurate Aligner Based on the Pufferfish Index

Published: Aug. 12, 2020, 2:05 a.m.
Duration: N/A

Listed in: Science

Learning with uncertainty for biological discovery and design

Published: Aug. 12, 2020, 2:05 a.m.
Duration: N/A

Listed in: Science

Bio-informatic Analysis of Missense Single Nucleotide Polymorphisms (SNPs) in Human CD38 Gene Associated with B-Chronic Lymphocytic Leukemia

Published: Aug. 12, 2020, 2:04 a.m.
Duration: N/A

Listed in: Science

Tutorial: Assessing metagenomics software with the CAMI benchmarking toolkit

Published: Aug. 12, 2020, 2:04 a.m.
Duration: N/A

Listed in: Science

DNN-DTIs: improved drug-target interactions prediction using XGBoost feature selection and deep neural network

Published: Aug. 12, 2020, 2:04 a.m.
Duration: N/A

Listed in: Science

FITs: Forest of imputation trees for recovering true signals in single-cell open chromatin profiles

Published: Aug. 12, 2020, 2:04 a.m.
Duration: N/A

Listed in: Science

Cisplatin is more mutagenic than carboplatin or oxaliplatin at equitoxic concentrations

Published: Aug. 12, 2020, 2:04 a.m.
Duration: N/A

Listed in: Science

PairGP: Gaussian process modeling of longitudinal data from paired multi-condition studies

Published: Aug. 12, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research

Published: Aug. 12, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships

Published: Aug. 12, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Common low complexity regions for SARS-CoV-2 and human proteomes as potential multidirectional risk factor in vaccine development

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

Scaling laws of graphs of 3D protein structures

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

Carbamazepine and GABA have distinct effects on seizure onset dynamics in mouse brain slices

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

A Comprehensive Classification of Coronaviruses and Inferred Cross-Host Transmissions

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

Identification of key genes in SARS-CoV-2 patients on bioinformatics analysis

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

FAIRSCAPE: A Framework for FAIR and Reproducible Biomedical Analytics

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

RNA secondary structure prediction using deep learning with thermodynamic integrations

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

BRAKER2: Automatic Eukaryotic Genome Annotation with GeneMark-EP+ and AUGUSTUS Supported by a Protein Database

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

An Ensemble Learning Approach for Cancer Drug Prediction

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data

Published: Aug. 11, 2020, 2:01 p.m.
Duration: N/A

Listed in: Science

VIP-HL: Semi-automated ACMGAMP variant interpretation platform for genetic hearing loss

Published: Aug. 10, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Continuous variable response, kinetic gating and connectivity that govern IS topology are perturbed in hyperinsulinemia

Published: Aug. 10, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Development of Putative Isospecific Inhibitors for HDAC6 using Random Forest, QM-Polarized docking, Induced-fit docking, and Quantum mechanics

Published: Aug. 10, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Deep Recurrent Neural Network and Point Process Filter Approaches in Multidimensional Neural Decoding Problems

Published: Aug. 10, 2020, 9 p.m.
Duration: N/A

Listed in: Science

Data Integration with SUMO Detects Latent Relationships Between Patients in Lower-Grade Gliomas

Published: Aug. 10, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

Rapid discovery of novel prophages using biological feature engineering and machine learning

Published: Aug. 10, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

RNAcmap: A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

Published: Aug. 10, 2020, 8:01 p.m.
Duration: N/A

Listed in: Science

Deep Learning assisted Peak Curation for large scale LC-MS Metabolomics

Published: Aug. 10, 2020, 8 p.m.
Duration: N/A

Listed in: Science

Raven: a de novo genome assembler for long reads

Published: Aug. 10, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Ig-VAE: Generative Modeling of Immunoglobulin Proteins by Direct 3D Coordinate Generation

Published: Aug. 10, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

CoRhythMo: A Computational Framework for Modeling Biobehavioral Rhythms from Mobile and Wearable Data Streams

Published: Aug. 10, 2020, 8:01 a.m.
Duration: N/A

Listed in: Science

On the complexity of haplotyping a microbial community

Published: Aug. 10, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Bioinformatic Analysis Reveals That Some Mutations May Affect On Both Spike Structure Damage and Ligand Binding Site

Published: Aug. 10, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

Petabase-scale sequence alignment catalyses viral discovery

Published: Aug. 10, 2020, 4:01 a.m.
Duration: N/A

Listed in: Science

Improving cell-specific drug connectivity mapping with collaborative filtering

Published: Aug. 10, 2020, 12:05 a.m.
Duration: N/A

Listed in: Science

A Detailed View of KIR Haplotype Structures and Gene Families as Provided by a New Motif-based Multiple Sequence Alignment

Published: Aug. 9, 2020, 6 p.m.
Duration: N/A

Listed in: Science

Identification of the keystone species in non-alcoholic fatty liver disease by causal inference and dynamic intervention modeling

Published: Aug. 7, 2020, 11:01 a.m.
Duration: N/A

Listed in: Science

Detecting regulatory elements in high-throughput reporter assays

Published: Aug. 7, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Identifying Transcriptomic Correlates of Histology using Deep Learning

Published: Aug. 7, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.

Published: Aug. 7, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Probability-based methods for outlier detection in replicated high-throughput biological data

Published: Aug. 7, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine

Published: Aug. 7, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Aggregation Tool for Genomic Concepts (ATGC): A deep learning framework for sparse genomic measures and its application to tumor mutational burden

Published: Aug. 7, 2020, 12:03 a.m.
Duration: N/A

Listed in: Science

Peak identification and quantification by proteomic mass spectrogram decomposition

Published: Aug. 6, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

vCOMBAT: a Novel Tool to Create and Visualize a COmputational Model of Bacterial Antibiotic Target-binding

Published: Aug. 6, 2020, 6:02 p.m.
Duration: N/A

Listed in: Science

Predicting Residues Involved in Anti-DNA Autoantibodies with Limited Neural Networks

Published: Aug. 6, 2020, 8:02 a.m.
Duration: N/A

Listed in: Science

scREAD: A single-cell RNA-Seq database for Alzheimer's Disease

Published: Aug. 6, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

Similarities and dissimilarities between psychiatric cluster disorders

Published: Aug. 6, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

SVCollector: Optimized sample selection for cost-efficient long-read population sequencing

Published: Aug. 6, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Exploration of Chemical Space with Partial Labeled Noisy Student Self-Training for Improving Deep Learning: Application to Drug Metabolism

Published: Aug. 6, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

matchms - processing and similarity evaluation of mass spectrometry data

Published: Aug. 6, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

3D quantification of zebrafish cerebrovascular architecture by automated image analysis of light sheet fluorescence microscopy datasets

Published: Aug. 6, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Evaluating Methods for Differential Gene Expression And Alternative Splicing Using Internal Synthetic Controls.

Published: Aug. 6, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Explaining decisions of Graph Convolutional Neural Networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer

Published: Aug. 6, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

SWITCHES: Searchable Web Interface for Topologies of CHEmical Switches.

Published: Aug. 5, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Host metabolic reprogramming in response to SARS-Cov-2 infection

Published: Aug. 5, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

A Deep Learning Framework for Predicting Human Essential Genes by Integrating Sequence and Functional data

Published: Aug. 5, 2020, 10:02 p.m.
Duration: N/A

Listed in: Science

Advances in mixed cell deconvolution enable quantification of cell types in spatially-resolved gene expression data

Published: Aug. 5, 2020, 10:01 p.m.
Duration: N/A

Listed in: Science

Bashing irreproducibility with shournal

Published: Aug. 5, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Using rapid prototyping to choose a bioinformatics workflow management system

Published: Aug. 5, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Towards A 3D Chromosome Shape Alphabet

Published: Aug. 5, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science

Imputation of Spatially-resolved Transcriptomes by Graph-regularized Tensor Completion

Published: Aug. 5, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Power-law scaling of brain wave activity associated with mental fatigue

Published: Aug. 4, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Pairwise Linkage Disequilibrium Estimation for Polyploids

Published: Aug. 4, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

GigaSOM.jl: High-perfomance clustering and visualization of huge cytometry datasets

Published: Aug. 4, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Data-driven causal analysis of observational time series: a synthesis

Published: Aug. 4, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

RAD: a web application to identify region associated differentially expressed genes

Published: Aug. 4, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

RNAlign2D, a novel RNA structural alignment tool based on pseudo-amino acid substitution matrix

Published: Aug. 4, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Single-cell identity definition using random forests and recursive feature elimination (scRFE)

Published: Aug. 4, 2020, 6 p.m.
Duration: N/A

Listed in: Science

EpiGraphDB: a database and data mining platform for health data science

Published: Aug. 4, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

RobMixReg: an R package for robust, flexible and high dimensional mixture regression

Published: Aug. 4, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Dense, high-resolution mapping of cells and tissues from pathology images for the interpretable prediction of molecular phenotypes in cancer

Published: Aug. 4, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Automated generation of context-specific Gene Regulatory Networks with a weighted approach in D. melanogaster

Published: Aug. 4, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Integrated Bioinformatics Analysis Deciphering the microRNA Regulation in Protein-Protein Interaction Network in Lung Adenocarcinoma

Published: Aug. 4, 2020, 9 a.m.
Duration: N/A

Listed in: Science

TREND-DB - A Transcriptome-wide Atlas of the Dynamic Landscape of Alternative Polyadenylation

Published: Aug. 4, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

Read trimming has minimal effect on bacterial SNP calling accuracy

Published: Aug. 4, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

SubFeat: Feature Subspacing Ensemble Classifier for Function Prediction of DNA, RNA and Protein Sequences

Published: Aug. 4, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Komenti: A semantic text mining framework

Published: Aug. 4, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Differential Privacy Protection Against Membership Inference Attack on Machine Learning for Genomic Data

Published: Aug. 4, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Synthetic Lethal Interactions Prediction Based on Multiple Similarity Measures Fusion

Published: Aug. 4, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Binding Ligands that Straddle an Important Contact Site on the RBD of the Covid-19 Spike Protein

Published: Aug. 4, 2020, midnight
Duration: N/A

Listed in: Science

Uncovering Transcriptional Dark Matter via Gene Annotation Independent Single-Cell RNA Sequencing Analysis

Published: Aug. 3, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

DLDTI: A learning-based framework for identification of drug-target interaction using neural networks and network representation

Published: Aug. 3, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions

Published: Aug. 3, 2020, 9 p.m.
Duration: N/A

Listed in: Science

scGNN: a novel graph neural network framework for single-cell RNA-Seq analyses

Published: Aug. 3, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

GridFree: A Python Package of Image Analysis for Interactive Grain Counting and Measuring

Published: Aug. 3, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

Using Single ProteinLigand Binding Models to Predict Active Ligands for Unseen Proteins

Published: Aug. 3, 2020, 6:02 a.m.
Duration: N/A

Listed in: Science

SARS-CoV-2 genome sequences from late April in Stockholm, Sweden reveal a novel mutation in the spike protein

Published: Aug. 3, 2020, 5:01 a.m.
Duration: N/A

Listed in: Science

CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data

Published: Aug. 2, 2020, 7:02 a.m.
Duration: N/A

Listed in: Science

Gut microbiota alterations due to fecal transplant

Published: Aug. 2, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

RFPlasmid: Predicting plasmid sequences from short read assembly data using machine learning

Published: Aug. 2, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Expansion Segments in Bacterial and Archaeal 5S Ribosomal RNAs

Published: Aug. 2, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

DPCfam: a new method for unsupervised protein family classification

Published: July 31, 2020, 10:27 p.m.
Duration: N/A

Listed in: Science

NetQuilt: Deep Multispecies Network-based Protein Function Prediction using Homology-informed Network Similarity

Published: July 31, 2020, 10:27 p.m.
Duration: N/A

Listed in: Science

Automated prediction of the clinical impact of structural copy number variations

Published: July 31, 2020, 10:11 p.m.
Duration: N/A

Listed in: Science

VirPreNet: A weighted ensemble convolutional neural network for the virulence prediction of influenza A virus using all 8 segments

Published: July 31, 2020, 5:02 a.m.
Duration: N/A

Listed in: Science

A composite method to infer drug resistance with mixed genomic data

Published: July 31, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

Inference of ploidy by leveraging read depth from amplicon sequencing

Published: July 31, 2020, 2:01 a.m.
Duration: N/A

Listed in: Science

New Pathways of Mutational Change in SARS-CoV-2 Proteomes Involve Regions of Intrinsic Disorder Important for Virus Replication and Release

Published: July 31, 2020, 2:01 a.m.
Duration: N/A

Listed in: Science

CoCoNet: Boosting RNA contact prediction by convolutional neural networks

Published: July 31, 2020, 2:01 a.m.
Duration: N/A

Listed in: Science

Global variation in the SARS-CoV-2 proteome reveals the mutational hotspots in the drug and vaccine candidates

Published: July 31, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Identifying genes and cell types with dynamic alternative polyadenylation in multi-cluster single-cell transcriptomics data

Published: July 31, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes

Published: July 30, 2020, 11:01 p.m.
Duration: N/A

Listed in: Science

Validating gene-phenotype associations using relationships in the UMLS

Published: July 30, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

Intrinsically disordered protein ensembles shape evolutionary rates revealing conformational patterns

Published: July 30, 2020, 10:02 a.m.
Duration: N/A

Listed in: Science

Virtual Screening and Elucidation of Putative Binding Mode for Small Molecule Antagonist of BCL2 BH4 Domain

Published: July 30, 2020, 10:01 a.m.
Duration: N/A

Listed in: Science

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

Published: July 30, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Straightforward and reproducible analysis of bacterial pangenomes using Pagoo

Published: July 30, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Noise regularization removes correlation artifacts in single-cell RNA-seq data preprocessing

Published: July 30, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Dynamic Configuration of Coactive Micropatterns in the Default Mode Network during Wakefulness and Sleep

Published: July 30, 2020, 9:01 a.m.
Duration: N/A

Listed in: Science

Repurposing Novobiocin for activity against latency associated Mycobacterium tuberculosis drug target nicotinate-nucleotide adenylyltransferase (Rv2421c)

Published: July 30, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

EUAdb: a resource for COVID-19 test development

Published: July 30, 2020, 1:01 a.m.
Duration: N/A

Listed in: Science

The impact of different negative training data on regulatory sequence predictions

Published: July 29, 2020, 6:01 p.m.
Duration: N/A

Listed in: Science

Estimation of Three-Dimensional Chromatin Morphology for Nuclear Classification and Characterisation

Published: July 29, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Impact Analysis of SARS-CoV2 on Signaling Pathways during COVID19 Pathogenesis using Codon Usage Assisted Host-Viral Protein Interactions

Published: July 29, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis

Published: July 29, 2020, 5 a.m.
Duration: N/A

Listed in: Science

Genomic analyses of glycine decarboxylase neurogenic mutations yield a large scale prediction model for prenatal disease.

Published: July 29, 2020, 3:01 a.m.
Duration: N/A

Listed in: Science

Exploring the quality of protein structural models from a Bayesian perspective

Published: July 29, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

MicroPhenoDB associates metagenomic data with pathogenic microbes, microbial core genes, and human disease phenotypes

Published: July 29, 2020, 2:02 a.m.
Duration: N/A

Listed in: Science

Unsupervised analysis of multi-experiment transcriptomic patterns with SegRNA identifies unannotated transcripts

Published: July 29, 2020, 1:03 a.m.
Duration: N/A

Listed in: Science

Epitope Prediction of Antigen Protein using Attention-Based LSTM Network

Published: July 29, 2020, 1:03 a.m.
Duration: N/A

Listed in: Science

Prediction of drug-protein interaction and drug repositioning using machine learning model

Published: July 29, 2020, 1:03 a.m.
Duration: N/A

Listed in: Science

Comparative Performance of Popular Methods for Hybrid Detection using Genomic Data

Published: July 29, 2020, 1:02 a.m.
Duration: N/A

Listed in: Science

RSGSA: a Robust and Stable Gene Selection Algorithm

Published: July 28, 2020, 10:11 p.m.
Duration: N/A

Listed in: Science

Identifying signaling genes in spatial single cell expression data

Published: July 28, 2020, 10:11 p.m.
Duration: N/A

Listed in: Science

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

Published: July 28, 2020, 7:01 a.m.
Duration: N/A

Listed in: Science

Automated prediction and annotation of small proteins in microbial genomes

Published: July 28, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

coronaSPAdes: from biosynthetic gene clusters to coronaviral assemblies

Published: July 28, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators and co-option of cellular pathways

Published: July 28, 2020, 12:01 a.m.
Duration: N/A

Listed in: Science

Single-cell transcriptomics of the Drosophila wing disc reveals instructive epithelium-to-myoblast interactions

Published: July 27, 2020, 7:18 p.m.
Duration: N/A

Listed in: Science

Protein Surface Printer for Exploring Protein Domains

Published: July 27, 2020, 7:18 p.m.
Duration: N/A

Listed in: Science

Predicting the Emergence of SARS-CoV-2 Clades

Published: July 27, 2020, 6:01 a.m.
Duration: N/A

Listed in: Science

Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis

Published: July 26, 2020, 9:25 p.m.
Duration: N/A

Listed in: Science

miRinGO: Prediction of biological processes indirectly targeted by human microRNAs

Published: July 26, 2020, 7:30 p.m.
Duration: N/A

Listed in: Science

A Simple Optimization Workflow to Enable Precise and Accurate Imputation of Missing Values in Proteomic Datasets

Published: July 26, 2020, 7:18 p.m.
Duration: N/A

Listed in: Science

Minimally-overlapping words for sequence similarity search

Published: July 26, 2020, 7:18 p.m.
Duration: N/A

Listed in: Science

NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm

Published: July 26, 2020, 7:18 p.m.
Duration: N/A

Listed in: Science

partR2: Partitioning R2 in generalized linear mixed models

Published: July 26, 2020, 7:18 p.m.
Duration: N/A

Listed in: Science

What the Phage: A scalable workflow for the identification and analysis of phage sequences

Published: July 25, 2020, 8:59 p.m.
Duration: N/A

Listed in: Science

Domino: reconstructing intercellular signaling dynamics with transcription factor activation in model biomaterial environments

Published: July 25, 2020, 8:59 p.m.
Duration: N/A

Listed in: Science

An in-silico study on SARS-CoV-2: Its compatibility with human tRNA pool, and the polymorphism arising in a single lineage over a month

Published: July 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity

Published: July 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

MicrobeTrace: Retooling Molecular Epidemiology for Rapid Public Health Response

Published: July 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Accurate and sensitive detection of microbial eukaryotes from metagenomic shotgun sequencing data

Published: July 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Detection of clustered anomalies in single-voxel morphometry as a rapid automated method for identifying intracranial aneurysms.

Published: July 24, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Multi-layered network-based pathway activity inference using directed random walks: application to predicting clinical outcomes in urologic cancer

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

FlowScatt: enabling volume-independent flow cytometry data by decoupling fluorescence from scattering

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

HTSeqQC: A Flexible and One-Step Quality Control Software for High-throughput Sequence Data Analysis

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

Learning to count: determining the stoichiometry of bio-molecular complexes using fluorescence microscopy and statistical modelling

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

barcodetrackR: an R package for the interrogation of clonal tracking data

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

Detection of homozygous and hemizygous partial exon deletions by whole-exome sequencing

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

Towards Building a Smart Kidney Atlas: Network-based integration of multimodal transcriptomic, proteomic, metabolomic and imaging data in the Kidney Precision Medicine Project

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

PecanPy: a fast, efficient, and parallelized Python implementation of node2vec

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

Annotation of Chromatin States in 66 Complete Mouse Epigenomes During Development

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

Genomic network analysis of an environmental and livestock IncF plasmid population

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

Immuno-informatics approach for multi-epitope vaccine designing against SARS-CoV-2

Published: July 24, 2020, 9 p.m.
Duration: N/A

Listed in: Science

In Silico Driven Prediction of MAPK14 Off-Targets Reveals Unrelated Proteins with High Accuracy

Published: July 24, 2020, 8:59 p.m.
Duration: N/A

Listed in: Science

Development of predictive QSAR models on the phosphopeptide binding affinity against 14-3-3 isoforms

Published: July 24, 2020, 8:59 p.m.
Duration: N/A

Listed in: Science

A novel haplotype-based eQTL approach identifies genetic associations not detected through conventional SNP-based methods

Published: July 24, 2020, 8:59 p.m.
Duration: N/A

Listed in: Science

Unveiling transposable element expression heterogeneity in cell fate regulation at the single-cell level

Published: July 24, 2020, 8:59 p.m.
Duration: N/A

Listed in: Science

PACIFIC: A lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA viruses

Published: July 24, 2020, 8:59 p.m.
Duration: N/A

Listed in: Science

Phylogeny of the COVID-19 Virus SARS-CoV-2 by Compression

Published: July 23, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

Precise characterization of somatic structural variations and mobile element insertions from paired long-read sequencing data with nanomonsv

Published: July 23, 2020, 9:01 p.m.
Duration: N/A

Listed in: Science

DeepG4 : A deep learning approach to predict active G-quadruplexes

Published: July 23, 2020, 9:01 p.m.
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Listed in: Science

Cell-ID: gene signature extraction and cell identity recognition at individual cell level

Published: July 23, 2020, 9:01 p.m.
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Listed in: Science

Fully unsupervised deep mode of action learning for phenotyping high-content cellular images

Published: July 23, 2020, 9:01 p.m.
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Listed in: Science

Evaluating the Number of Different Genomes in a Metagenome by Means of the Compositional Spectra Approach

Published: July 23, 2020, 9:01 p.m.
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Listed in: Science

Identifying transcription patterns of histology and radiomics features in NSCLC with neural networks

Published: July 22, 2020, 9:02 p.m.
Duration: N/A

Listed in: Science