Hi-C and Three-Dimensional Genome Sequencing (Erez Lieberman Aiden)

Published: April 23, 2020, 2:34 p.m.

b'In this episode of the Epigenetics Podcast, we caught up with Erez Lieberman Aiden, Ph.D. from Baylor College of Medicine and Rice University in Houston to talk about his work on developing Hi-C and investigating the three-dimensional structure of the genome. He was the first author on a publication in the journal Science titled "Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome" which was the paper that first introduced the Hi-C method in 2009 and he has continued studying the structure of the chromosome ever since. \\nErez Lieberman Aiden is currently an Assistant Professor in both the Department of Genetics at the Baylor College of Medicine, where he directs the newly-established Center for Genome Architecture, and in the Department of Computer Science and Computational and Applied Mathematics at Rice University across the street.\\nIn this interview, we discuss the road that Erez Lieberman Aiden went down to optimize the Hi-C protocol, the hurdles he had to overcome, and how Hi-C made it possible to probe the three-dimensional structure of the genome. \\nReferences\\xa0\\nErez Lieberman-Aiden, Nynke L. van Berkum, \\u2026 Job Dekker (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome (Science (New York, N.Y.)) DOI: 10.1126/science.1181369\\xa0\\nSuhas\\xa0S. P. Rao, Miriam\\xa0H. Huntley, \\u2026 Erez\\xa0Lieberman Aiden (2014) A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping (Cell) DOI: 10.1016/j.cell.2014.11.021\\xa0\\nAdrian L. Sanborn, Suhas S. P. Rao, \\u2026 Erez Lieberman Aiden (2015) Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes (Proceedings of the National Academy of Sciences) DOI: 10.1073/pnas.1518552112\\xa0\\nSuhas S.P. Rao, Su-Chen Huang, \\u2026 Erez Lieberman Aiden (2017) Cohesin Loss Eliminates All Loop Domains (Cell) DOI: 10.1016/j.cell.2017.09.026\\nContact\\n\\xa0\\nActive Motif on Twitter\\nEpigenetics Podcast on Twitter\\nActive Motif on Linked-In\\nActive Motif on Facebook\\neMail: podcast@activemotif.com'